Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq7215 138 1e-27 seq177 98.7 1e-15 seq49828 86.0 6e-12 >seq7215 Length=34700 Score = 138 bits (152), Expect = 1e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||||||||| || || || ||||| || | ||| ||||||| |||||||| | Sbjct 16588 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCT 16647 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||| ||||||||||| ||||| || || |||||||| ||||| |||||||||||||| | Sbjct 16648 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 16707 Query 14014 CTATTAATCGTTCTCC 14029 ||| || ||||| || Sbjct 16708 CTACTACACGTTCACC 16723 Score = 100 bits (110), Expect = 3e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| |||||||||| | || | |||||||||||||||||||| ||| Sbjct 15020 GACATCACACCCATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCT 15079 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 ||||| || ||||| |||||||| ||||||||||| Sbjct 15080 TCCAGAGAGATATTCTCCATAAAGTCAAATGGATT 15114 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/115 (77%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 14127 TCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 ||||||| | ||| ||| || |||||||||||||| ||||||||||| || || |||| Sbjct 18642 TCTTTAGAATCCTT--AATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 18699 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 | ||||| || ||||| || ||||| || || | ||||| | ||||||||| Sbjct 18700 TCTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 18754 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/115 (77%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 14127 TCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 ||||||| | ||| ||| || |||||||||||||| ||||||||||| || || |||| Sbjct 22590 TCTTTAGAATCCTT--AATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 22647 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 | ||||| || ||||| || ||||| || || | ||||| | ||||||||| Sbjct 22648 TCTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 22702 >seq177 Length=121252 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 |||||||| ||||||||||| || || || || | |||||||| || |||| || || Sbjct 54722 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 54663 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 | ||||||||| || ||||| | || || ||||| ||||| || || ||||||||||| Sbjct 54662 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGC 54604 >seq49828 Length=5021 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/115 (77%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 14127 TCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 ||||||| | ||| ||| || |||||||||||||| ||||||||||| || || |||| Sbjct 4647 TCTTTAGAATCCTT--AATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 4590 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 | ||||| || ||||| || ||||| || || | ||||| | ||||||||| Sbjct 4589 TCTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 4535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478612224631200