Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq7215 132 5e-26 seq177 93.3 4e-14 seq49828 86.0 6e-12 >seq7215 Length=34700 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||||||||| || || || ||||| || | ||| ||||||| |||||||| | Sbjct 16588 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCT 16647 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 ||| ||||||||||| || || || || |||||||| ||||| |||||||||||||| | Sbjct 16648 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 16707 Query 13802 CTATTAGTCGTTCTCC 13817 ||| || ||||| || Sbjct 16708 CTACTACACGTTCACC 16723 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || ||||| |||||||||| | || | |||||||| ||||||||||| ||| Sbjct 15020 GACATCACACCCATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCT 15079 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATT 13448 ||||| || ||||| |||||||| || |||||||| Sbjct 15080 TCCAGAGAGATATTCTCCATAAAGTCAAATGGATT 15114 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/115 (77%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 13915 TCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 13972 ||||||| | ||| ||| || |||||||||||||| ||||||||||| || || |||| Sbjct 18642 TCTTTAGAATCCTT--AATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 18699 Query 13973 TTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 | || || || ||||| || ||||| ||||| | ||||||| |||||| || Sbjct 18700 TCTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 18754 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/115 (77%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 13915 TCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 13972 ||||||| | ||| ||| || |||||||||||||| ||||||||||| || || |||| Sbjct 22590 TCTTTAGAATCCTT--AATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 22647 Query 13973 TTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 | || || || ||||| || ||||| ||||| | ||||||| |||||| || Sbjct 22648 TCTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 22702 >seq177 Length=121252 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13743 |||||||| ||||||||||| || || || || | |||||||| || |||| || || Sbjct 54722 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 54663 Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 13802 | ||||||||| || || || | || || ||||| ||||| || || ||||||||||| Sbjct 54662 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGC 54604 >seq49828 Length=5021 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/115 (77%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 13915 TCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 13972 ||||||| | ||| ||| || |||||||||||||| ||||||||||| || || |||| Sbjct 4647 TCTTTAGAATCCTT--AATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGT 4590 Query 13973 TTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 | || || || ||||| || ||||| ||||| | ||||||| |||||| || Sbjct 4589 TCTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 4535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477475674239520