Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq7215 116 3e-21 seq10542 104 2e-17 seq49828 93.3 4e-14 seq27652 82.4 7e-11 >seq7215 Length=34700 Score = 116 bits (128), Expect = 3e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || ||||| || ||||| || || || ||||| || |||||||| || Sbjct 16590 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCTTT 16649 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||||||||| | ||||| || || ||||| || |||||||||||||| ||||| ||| Sbjct 16650 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 16709 Query 13295 ATCAACCTTTCACC 13308 | | | |||||| Sbjct 16710 ACTACACGTTCACC 16723 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||||||||| || | ||| |||||||||||||||||||| || ||||| || || || Sbjct 18656 AATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTG 18715 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| || || ||||| Sbjct 18716 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 18754 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||||||||| || | ||| |||||||||||||||||||| || ||||| || || || Sbjct 22604 AATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTG 22663 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| || || ||||| Sbjct 22664 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 22702 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 12956 TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATT 13015 || ||| | |||| ||| || | || |||||| || || || || || ||||| |||||| Sbjct 15971 TTGTTAAAACCTAGTTCCAGAATCAGTCTGTCTGCTACGAATTCAATATACTGCTTCATT 16030 Query 13016 AAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065 ||| ||||||||||| |||| |||||||||| |||||||| ||||| Sbjct 16031 AAAATGCAGTTCATTCCGATTAGGTTTACAGGCAATGCTTCTGTCAAAAA 16080 >seq10542 Length=25578 Score = 104 bits (114), Expect = 2e-17 Identities = 134/181 (74%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 5448 GAAAAACATTCCACTGTAAAACCCCACATAATAAAATCCAGACACTA-TTTTACACGTAA 5506 |||||| |||||||||| || | | | |||| | |||||| |||| |||| ||| | Sbjct 3250 GAAAAAGCTTCCACTGTAGAAGCTTAAAAAATAGATTCCAGA-ACTAATTTTGCACATTG 3192 Query 5507 AATTTCCAAATATCCACTGATCTAACTGATAATGTATTTGAAATGGAAATGACATAACAA 5566 || |||||||| ||||| ||||| || | |||| || ||| ||||| ||| | || | Sbjct 3191 CATCTCCAAATACCCACTCATCTAGCTTAGAATGAATCCGAACTGGAATTGAGAAAATGA 3132 Query 5567 ATAACAGATCGGATATGGCTAAATTTATTAAAAATATATCAGTTACAGTCTTTAACTTTC 5626 | | || ||| || | ||||||||||| || |||||||||| | | |||| || |||| Sbjct 3131 AAAGCAAATCAGAGACGGCTAAATTTAATAGGTATATATCAGTCATATTCTTGAA-TTTC 3073 Query 5627 T 5627 | Sbjct 3072 T 3072 >seq49828 Length=5021 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 |||||||||||| || | ||| |||||||||||||||||||| || ||||| || || || Sbjct 4633 AATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTG 4574 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| || || ||||| Sbjct 4573 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 4535 >seq27652 Length=34299 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 5410 ACGATAGAGATGTACCTGTGAACGCTCATAACAGTGACGAAAAACATTCCACTGTAAAAC 5469 || |||| | ||| |||| || ||| || | ||||| ||| |||| |||| | | Sbjct 20178 ACAATAGCTAGGTATCTGTCAATGCTTATGATAGTGATGAAGAACACGCCACCAAAGAGG 20237 Query 5470 CCCACATAATAAAATCCAGACACTATTTTACACGTAAAATTTCCAAATATCCACTGATCT 5529 ||||| |||| || ||| ||||||| || ||||| ||||||| | |||| | || | Sbjct 20238 CCCACGGAATAGAAAGAAGAAACTATTTGGCATGTAAAGTTTCCAAGTGTCCAATCATGT 20297 Query 5530 AACTGATAATGTATTTGAAATGGAAATGACATAACAAATAACAGATCGGATATGGCTAAA 5589 | |||| ||| |||| || || ||||| | |||||||| ||||| | | Sbjct 20298 ATAATATAAAAAGCCCAAAAAGGAAGAGAAATCACAAAAAGAAGATCGGAGATGGCCAGA 20357 Query 5590 TTTATTAAAAATATATCAGT 5609 || | |||||||||||||| Sbjct 20358 TTAAAAAAAAATATATCAGT 20377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430005059595336