Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21]
186,068 sequences; 1,520,334,138 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq9360 167 5e-36
seq29087 158 3e-33
seq174935 122 2e-22
seq177 93.3 1e-13
seq7215 87.8 4e-12
>seq9360
Length=62991
Score = 167 bits (184), Expect = 5e-36
Identities = 136/165 (82%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 78486 GAGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCA 78545
|||| |||||||||||||| || || ||||| || || || || || || || |||||||
Sbjct 41495 GAGCTTTATGGTGGTATTACATATCCAAAGGGATTGAGTATCTGGACACAATATTCTTCA 41436
Query 78546 TCCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGT 78605
||||| ||||||||||||||||||| || ||||| ||||| ||||| ||||| |||||||
Sbjct 41435 TCCTAAGAAAGAAATTTAATCAAATCAGCTTTCTTCATGTCTATCACCATTTCACTATGT 41376
Query 78606 TTACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
||||||| | ||| | || || || ||| | |||||||||||||
Sbjct 41375 TTACTTTATGGTGGGTTGGCATAAAGTGGGTTGCAGGAGGACAAG 41331
>seq29087
Length=41947
Score = 158 bits (174), Expect = 3e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| || | || || ||||| | ||||| || ||||| || || |||||
Sbjct 35306 ATGCCTCCTCTCAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 35247
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || ||||| || ||||| || || || || |||||||| |||||||||
Sbjct 35246 GAGAGGGTACGGCCATCTTCCAGCTGTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGA 35187
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| |||||||| ||||| || || ||||| || | ||| || || || ||
Sbjct 35186 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 35127
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || ||||| ||||| | || || ||||| ||||||||
Sbjct 35126 ACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 35077
Score = 154 bits (170), Expect = 3e-32
Identities = 174/233 (75%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || || || | || || ||||| | || || || ||||| || || |||||
Sbjct 34850 ATCCCACCCCTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 34791
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || ||||| || || || || ||||| || |||||||| |||||||||
Sbjct 34790 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGA 34731
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| |||||||| ||||| || || ||||| || | ||| || || || ||
Sbjct 34730 GGAATGCCTTCCTTATCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 34671
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||||| || || || ||||| ||||| | || || ||||| |||||||||||
Sbjct 34670 ACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 34618
Score = 141 bits (156), Expect = 2e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || || || || | || || ||||| | || || || ||||| || || |||||
Sbjct 35078 ATCCCACCCCTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 35019
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || ||||| || ||||| || || || || |||||||| |||||||||
Sbjct 35018 GAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGA 34959
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| |||||||| ||||| || || || || || | ||| || || || ||
Sbjct 34958 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCC 34899
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || ||||| ||||| | || || || || ||||||||
Sbjct 34898 ACCTCCAGGGTGATGGTCTTYCCAGTCAAGGTCTTCACRAAGATCTGCAT 34849
>seq174935
Length=570
Score = 122 bits (134), Expect = 2e-22
Identities = 118/152 (78%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
|| ||||| || ||||| || |||||||| ||||| ||||| || ||||| || |||||
Sbjct 1 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGG 60
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || || ||||| || | ||| ||||| || || ||||| || || || |||||
Sbjct 61 ATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 120
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
|| || | || || ||||| |||||||||||
Sbjct 121 CCGGTCAAGGTCTTCACAAAGATCTGCATTTT 152
>seq177
Length=121252
Score = 93.3 bits (102), Expect = 1e-13
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975
||||| || ||||| || ||||| | ||||| || || || |||||| | |||||||||
Sbjct 52703 CAAGAAGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGCTTTCAGATATCAATAGAAAAT 52762
Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016
||||||| |||||||||||| | |||||||| || || ||
Sbjct 52763 GTTCATTCTGAGATGTACAGTTTGTTAATAGACACCTACAT 52803
>seq7215
Length=34700
Score = 87.8 bits (96), Expect = 4e-12
Identities = 110/151 (73%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 269485 ATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAA 269544
||| || | ||| ||||| ||| |||||||||||||| || | ||||| || ||||
Sbjct 15127 ATACAAGGCTGAGAATCCATTTGACTTTATGGAGAATATCTCTCTGGAAGGCAAAACTAA 15068
Query 269545 TTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGA 269604
||||| || ||||| ||| | | ||||| | |||||||| ||||| | | | |||
Sbjct 15067 CTTCTTTGAAAAGCGTGTAGGAGAATATCAAAGGATGGGTGTGATGTCAAGTCCTGCAGA 15008
Query 269605 AAATATTTTCACTACAGATGCAGAATTCTAA 269635
||| |||||| |||||||| ||||||
Sbjct 15007 TAATTCATTCACTTTGGATGCAGATTTCTAA 14977
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1148653470532144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |