Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq9360 167 5e-36 seq29087 158 3e-33 seq174935 122 2e-22 seq177 93.3 1e-13 seq7215 87.8 4e-12 >seq9360 Length=62991 Score = 167 bits (184), Expect = 5e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 78486 GAGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCA 78545 |||| |||||||||||||| || || ||||| || || || || || || || ||||||| Sbjct 41495 GAGCTTTATGGTGGTATTACATATCCAAAGGGATTGAGTATCTGGACACAATATTCTTCA 41436 Query 78546 TCCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGT 78605 ||||| ||||||||||||||||||| || ||||| ||||| ||||| ||||| ||||||| Sbjct 41435 TCCTAAGAAAGAAATTTAATCAAATCAGCTTTCTTCATGTCTATCACCATTTCACTATGT 41376 Query 78606 TTACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 ||||||| | ||| | || || || ||| | ||||||||||||| Sbjct 41375 TTACTTTATGGTGGGTTGGCATAAAGTGGGTTGCAGGAGGACAAG 41331 >seq29087 Length=41947 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | ||||| || ||||| || || ||||| Sbjct 35306 ATGCCTCCTCTCAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 35247 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| || || || || |||||||| ||||||||| Sbjct 35246 GAGAGGGTACGGCCATCTTCCAGCTGTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGA 35187 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| ||||| || || ||||| || | ||| || || || || Sbjct 35186 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 35127 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| | || || ||||| |||||||| Sbjct 35126 ACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 35077 Score = 154 bits (170), Expect = 3e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || || ||||| Sbjct 34850 ATCCCACCCCTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 34791 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || |||||||| ||||||||| Sbjct 34790 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGA 34731 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| ||||| || || ||||| || | ||| || || || || Sbjct 34730 GGAATGCCTTCCTTATCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 34671 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| ||||| | || || ||||| ||||||||||| Sbjct 34670 ACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 34618 Score = 141 bits (156), Expect = 2e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || || || ||||| || || ||||| Sbjct 35078 ATCCCACCCCTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 35019 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || ||||| || || || || |||||||| ||||||||| Sbjct 35018 GAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGA 34959 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||| ||||| || || || || || | ||| || || || || Sbjct 34958 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCC 34899 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| | || || || || |||||||| Sbjct 34898 ACCTCCAGGGTGATGGTCTTYCCAGTCAAGGTCTTCACRAAGATCTGCAT 34849 >seq174935 Length=570 Score = 122 bits (134), Expect = 2e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || ||||| || ||||| || |||||||| ||||| ||||| || ||||| || ||||| Sbjct 1 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGG 60 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || ||||| || | ||| ||||| || || ||||| || || || ||||| Sbjct 61 ATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 120 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || | || || ||||| ||||||||||| Sbjct 121 CCGGTCAAGGTCTTCACAAAGATCTGCATTTT 152 >seq177 Length=121252 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 ||||| || ||||| || ||||| | ||||| || || || |||||| | ||||||||| Sbjct 52703 CAAGAAGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGCTTTCAGATATCAATAGAAAAT 52762 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 ||||||| |||||||||||| | |||||||| || || || Sbjct 52763 GTTCATTCTGAGATGTACAGTTTGTTAATAGACACCTACAT 52803 >seq7215 Length=34700 Score = 87.8 bits (96), Expect = 4e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 269485 ATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAA 269544 ||| || | ||| ||||| ||| |||||||||||||| || | ||||| || |||| Sbjct 15127 ATACAAGGCTGAGAATCCATTTGACTTTATGGAGAATATCTCTCTGGAAGGCAAAACTAA 15068 Query 269545 TTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGA 269604 ||||| || ||||| ||| | | ||||| | |||||||| ||||| | | | ||| Sbjct 15067 CTTCTTTGAAAAGCGTGTAGGAGAATATCAAAGGATGGGTGTGATGTCAAGTCCTGCAGA 15008 Query 269605 AAATATTTTCACTACAGATGCAGAATTCTAA 269635 ||| |||||| |||||||| |||||| Sbjct 15007 TAATTCATTCACTTTGGATGCAGATTTCTAA 14977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148653470532144