Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq69150 91.5 8e-14 seq23788 87.8 9e-13 seq61740 86.0 3e-12 seq60741 84.2 1e-11 seq5295 84.2 1e-11 seq82 84.2 1e-11 >seq69150 Length=3226 Score = 91.5 bits (100), Expect = 8e-14 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 11433 ATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 ||| || ||| ||||| | |||||||| | |||||||||| ||||||| ||||| Sbjct 1711 ATAAAAATAAAAAAAACACTCATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTT 1652 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||| |||||||||||||| |||| Sbjct 1651 ATTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 1615 >seq23788 Length=19405 Score = 87.8 bits (96), Expect = 9e-13 Identities = 78/97 (80%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 955 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 896 Query 11515 CTGAGCTAATGGGCCGTCGA-CGATTGTGATTTTTCA 11550 ||||||||| |||| | | || |||| ||||||| Sbjct 895 CTGAGCTAACCGGCCACCTATAGAATGTGGTTTTTCA 859 >seq61740 Length=9288 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||| Sbjct 88 ATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCA 29 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 28 ACTGAGCTAACCGGCC 13 >seq60741 Length=3857 Score = 84.2 bits (92), Expect = 1e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| ||||| || |||||| | |||||||||| ||||||| ||||||||||||| Sbjct 2660 AATTAAAAAGGAA--TGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 2603 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 2602 CACGCTCTAACCAACTGAGCTAACCGGCC 2574 >seq5295 Length=76193 Score = 84.2 bits (92), Expect = 1e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 50600 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 50541 Query 11515 CTGAGCTAATGGGCCGTCGACGA 11537 ||||||||| |||| | |||| Sbjct 50540 CTGAGCTAACCGGCCCTTTACGA 50518 Score = 84.2 bits (92), Expect = 1e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 53743 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 53684 Query 11515 CTGAGCTAATGGGCCGTCGACGA 11537 ||||||||| |||| | |||| Sbjct 53683 CTGAGCTAACCGGCCCTTTACGA 53661 >seq82 Length=111486 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 63376 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 63435 Query 11528 CCGTC 11532 || || Sbjct 63436 CCATC 63440 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260898215425168