Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq13272 131 2e-25 >seq13272 Length=16287 Score = 131 bits (144), Expect = 2e-25 Identities = 175/238 (74%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCT-CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGA 8799 || ||||| |||| ||||| ||| || || || || || || |||||||| | || || Sbjct 10254 TTCACGATGTCAAAGCCCAC-TCTACCCCCAAAAGTACTTGGCTTCCAGTATTCAGGTGA 10196 Query 8800 GCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCT 8859 ||||||||| || |||| || ||||| | ||| || |||||||| || || | ||| | Sbjct 10195 GCAGATGACATTTCCCATAAGACCTTTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGT 10136 Query 8860 CTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCCA 8918 |||||| |||||||| || || ||||||| || |||||| | | ||| || |||| Sbjct 10135 CTCACCAAAGATGGCTCCAGGGCGTGGCTTTT-CAACAAGAAGAGCAGGGTATAATTCCA 10077 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT 8976 ||| || || ||||| || || | ||||| ||||| ||||| ||||| ||||| Sbjct 10076 TAGCATCAATATCTCCATAGAGCTCTTCAAGTTCTGCAGCCATTTCTTTTTCACCTGT 10019 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 |||||||| ||| |||| ||| ||||||||| ||||||| || || || || || || Sbjct 7304 GTCTGAAATAGTCGTTCATCATCCCATTCTGGGTGTTCTCCCTTAAGGACGTCACAGACC 7245 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 | || ||||||| |||||| | || || |||||||| || || || |||| |||||| Sbjct 7244 CGATTATGTTCCCGGAGCCACAACGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAG 7185 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || |||| | || | || || | | ||| ||||||||||| | Sbjct 7184 ACCTCCTGTCCTACAGAAAATTTCAGGTGGTCAGGGATGTGGGGTGGATAGATCATTTCT 7125 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTG 9863 |||| ||||| || | || ||||||||||| || ||||| ||||| Sbjct 7124 GCCTGAGTTTCTTTCACAGTAGGCGGATACATTTCTCCATCAATCATCTG 7075 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||||||||| || || ||||| |||||| | || ||| | | ||| || | || Sbjct 5961 CTTACCCCATGCCCAAGACCTTTTGTGAAGCCTGGTCCTTTCTGAATATCTGTTTTGAAG 5902 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 ||||||| |||||||| ||| |||| |||| ||||| | || ||||| || ||||| Sbjct 5901 TACTGGTGAGTGAAATGCTGGGCAAAGAAGGTGAACATGACATTTGTGCCTTGAGGATCA 5842 Query 10149 GGAGTGAAGGTCCTCCGAAG-AAGAGTTTTT 10178 ||| |||| | |||| || |||| ||||| Sbjct 5841 GGAATGAATTTTCTCCTTAGCAAGAATTTTT 5811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 706876877593920