Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq29087 104 2e-17 seq174935 93.3 4e-14 >seq29087 Length=41947 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| | ||| | ||| |||||||| || ||| Sbjct 34817 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 34758 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | || |||||||| |||||||| ||||| || || | || || |||||| Sbjct 34757 GCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTAGCCTTG 34698 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | |||||| | | || || || | |||||||| || ||||| | || Sbjct 34697 ACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTC 34638 Query 94991 TTCACAAAGATCTGCAT 95007 ||||||||||||||||| Sbjct 34637 TTCACAAAGATCTGCAT 34621 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||||| || | || | || | ||||| ||||| || | ||| || ||| Sbjct 35303 CCTCCTCTCAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 35244 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| ||||||||||| || | ||||| | || |||||||| |||||| Sbjct 35243 AGGGTACGGCCATCTTCCAGCTGTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGAGGA 35184 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || |||||||| | | |||||| | | || || Sbjct 35183 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 35124 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| | || ||||||||||||||||| Sbjct 35123 TCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 35077 Score = 102 bits (112), Expect = 7e-17 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||| | ||| | ||| ||||||||||| || Sbjct 35045 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCC 34986 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | || |||||||| |||||||| ||||| || || | || || |||||| Sbjct 34985 GCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTG 34926 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | |||||| | | || || || | |||||||| || ||||| | || Sbjct 34925 ACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTYCCAGTCAAGGTC 34866 Query 94991 TTCACAAAGATCTGCAT 95007 ||||| ||||||||||| Sbjct 34865 TTCACRAAGATCTGCAT 34849 >seq174935 Length=570 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 |||||||| ||| ||||||| | || |||||||| |||||||| ||||| ||||| | Sbjct 1 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGG 60 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||||| | | ||||| | | || || || | |||||||| || Sbjct 61 ATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 120 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | || ||||||||||||||||| Sbjct 121 CCGGTCAAGGTCTTCACAAAGATCTGCAT 149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447248541912480