Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq12208 187 4e-43 seq31510 179 6e-41 seq28341 176 7e-40 seq52228 170 3e-38 seq26971 170 3e-38 seq44988 159 5e-35 seq38638 159 5e-35 seq43442 152 8e-33 seq99526 120 5e-23 >seq12208 Length=17076 Score = 187 bits (206), Expect = 4e-43 Identities = 200/262 (76%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | |||| ||||||||||||||||| ||||| ||||| |||| Sbjct 1991 CGCAAAGCGCCACCGGAAAG-TCTTGCGAGATAACATCCAAGGCATCACTAAGCCCGCTA 2049 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| ||||||||||||| ||||| |||||| |||| || ||| ||||||| |||| Sbjct 2050 TCCGCCGTTTGGCTCGTCGTGGCGGAGTGAAGCGTATCTCCGGCTTGATCTATGAGGAGA 2109 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || | ||| ||||||| | | || |||| ||||| | || |||| Sbjct 2110 CTCGCGGGGTGCTAAAGGTCTTCCTTGAAAATGTCATCCGCGATGCCGTGACTTACACCG 2169 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | |||||||| || |||||||| | || ||||| ||||| || |||| Sbjct 2170 AGCACGCCAAGAGAAAGACTGTGACTGCCATGGATGTGGTGTATGCTTTGAAGCGCCAAG 2229 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||||| | || || ||||| Sbjct 2230 GCCGTACTCTGTACGGATTTGG 2251 >seq31510 Length=8505 Score = 179 bits (198), Expect = 6e-41 Identities = 183/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| ||||||||||| ||||| || || |||||||| ||||| Sbjct 6555 CTCCGCGATAACATCCAAGGCATCACCAAGCCTGCTATACGCCGCCTGGCTCGCCGTGGA 6496 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || ||| | || || ||| | || ||||||| ||| | ||| ||||| ||||| Sbjct 6495 GGTGTGAAACGTATTTCGGGCTTGATTTACGAAGAGACTCGCGGTGTACTGAAGGTCTTC 6436 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| |||||| | |||||| | ||| ||||||||||| || || |||||||| Sbjct 6435 TTGGAGAACGTTATTCGAGATGCTGTGACCTACACCGAGCACGCGAAGCGAAAGACTGTA 6376 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||||| |||||||| ||||| |||| | || ||||| || Sbjct 6375 ACTGCTATGGATGTTGTTTATGCCTTGAAACGCCAAGGTCGTACTCTGTACGGTTTCGG 6317 Score = 168 bits (186), Expect = 1e-37 Identities = 185/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| || |||||||| ||||| |||||| ||||||| ||||| Sbjct 4082 CTCCGCGATAACATCCAAGGCATTACCAAGCCTGCTATTCGTCGTTTGGCTCGCCGTGGG 4023 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| |||||| | ||||| ||| | |||||||| | ||| | || ||||| | || Sbjct 4022 GGAGTAAAGCGTATTTCTGGCTTGATTTATGAAGAAACTCGGGGCGTACTGAAGGTGTTT 3963 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | |||||| | |||||| | ||| |||||||| || ||||| ||||| || Sbjct 3962 CTGGAAAACGTTATTCGTGATGCCGTGACCTACACCGAGCATGCAAAACGGAAGACCGTG 3903 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| |||| ||||| ||||||| ||||| || | | ||||| || ||| Sbjct 3902 ACTGCGATGGACGTCGTTTATGCCCTGAAACGCCAAGGTCGCACTCTCTATGGCTTCGGA 3843 Query 16694 AGTTAA 16699 | ||| Sbjct 3842 GGCTAA 3837 >seq28341 Length=35211 Score = 176 bits (194), Expect = 7e-40 Identities = 202/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| ||||||| | |||| ||||||| || ||||| ||||| || || |||| Sbjct 6150 CGCAAAGCGCCATCGCAAAG-TCTTGAGAGATAATATTCAAGGCATCACTAAACCCGCTA 6208 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| |||||||||||||||| || |||||| ||||||| ||| |||| || |||| Sbjct 6209 TCCGCCGTTTGGCTCGTCGTGGTGGGGTGAAGCGTATCTCTGGCTTGATCTACGAGGAGA 6268 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || | || ||||||| | | || |||| ||||| | ||| |||| Sbjct 6269 CTCGAGGGGTGCTAAAAGTCTTCCTTGAAAATGTCATCCGCGATGCCGTGACCTACACCG 6328 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | |||||||| || |||||||| | || ||||| |||||||| |||| Sbjct 6329 AGCACGCCAAGAGAAAGACTGTGACTGCCATGGATGTGGTGTATGCCTTGAAACGCCAAG 6388 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | || | | || || ||||| ||||| Sbjct 6389 GACGCACTCTGTACGGATTTGGTGGTTAA 6417 >seq52228 Length=4721 Score = 170 bits (188), Expect = 3e-38 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| ||||||||||| ||||| || ||||||||||| ||||| Sbjct 857 CTCCGCGATAACATCCAAGGCATCACCAAGCCTGCTATACGCCGTCTGGCTCGCCGTGGA 916 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || ||| | || || ||| | |||||||||| ||||| ||| ||||| |||| Sbjct 917 GGTGTGAAACGTATTTCGGGCTTGATTTATGAAGAGACTCGTGGTGTACTGAAGGTCTTT 976 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| |||||| | |||||| | ||| | || ||||| || | |||||||| Sbjct 977 TTGGAGAACGTTATTCGAGATGCTGTGACCTACAATGAACACGCGAAGTGAAAGACTGTA 1036 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||||| |||||||| ||||| |||| | || ||||||| Sbjct 1037 ACTGCTATGGATGTTGTTTATGCCTTGAAACGCCAAGGTCGTACTCTGTACAGTTTTGG 1095 Score = 138 bits (152), Expect = 2e-28 Identities = 188/264 (71%), Gaps = 9/264 (3%) Strand=Plus/Plus Query 16436 AAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 ||| | ||||| | | || || |||||||||||||| || | |||| ||| Sbjct 4238 AAGAGACATCGGAAAGTGCTCCGCGATAACATCCAAGGCATTA---------CTATTCGT 4288 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555 ||| ||||||| ||||| ||||| |||||| | ||||| ||| | |||||||| | ||| Sbjct 4289 CGTTTGGCTCGCCGTGGGGGAGTAAAGCGTATTTCTGGTTTGATTTATGAAGAAACTCGG 4348 Query 16556 GATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 | ||| ||||| | || || | | |||||| ||||||| | ||| |||||||| Sbjct 4349 GGTGTGCTGAAGGTTTTTCTGTAAAACGTTATTTGTGATGCTGTGACCTACACCGAGCAT 4408 Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGT 16675 || ||||| ||||| || || ||||| ||||| ||||| ||||||| ||||| | Sbjct 4409 GCAAAACGAAAGACCGTGACTGTGATGGACATCGTTTATGCCCTGAAACGCCAAGGTCAC 4468 Query 16676 AAGATTTATGGTTTTGGAAGTTAA 16699 | | ||||| || ||| | ||| Sbjct 4469 ACACTCTATGGCTTCGGAGGCTAA 4492 >seq26971 Length=9851 Score = 170 bits (188), Expect = 3e-38 Identities = 200/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||| | || || | | || |||||||| ||||| || || ||||| ||||| || | Sbjct 5465 CGCTAAGAGGCACCGTAAGGTC-CTTCGAGACAACATTCAGGGCATCACGAAGCCCGCCA 5407 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || ||||||| ||||| ||||| |||||| |||| || | |||||||||||| Sbjct 5406 TTCGCCGCTTGGCTCGCCGTGGGGGAGTGAAGCGTATCTCCGGGCTCATCTATGAAGAGA 5347 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || |||||| ||||| | ||| ||||||| ||||| | |||||| | Sbjct 5346 CTCGAGGCGTCTTGAAGGTCTTCTTGGAGAATGTTATCCGGGATGCGGTTACCTATACTG 5287 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | || || || | ||||| || || ||||||| |||| ||||| |||||||| |||| Sbjct 5286 AACATGCCAAGAGAAAGACGGTGACGGCCATGGACGTCGTTTATGCTTTGAAACGCCAAG 5227 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| | | ||||||||||| |||| Sbjct 5226 GCCGCACCTTGTATGGTTTTGGTGGTTA 5199 >seq44988 Length=9065 Score = 159 bits (176), Expect = 5e-35 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||||||||| || ||||| ||||||||||| || || Sbjct 7854 CTTCGCGATAACATCCAGGGCATCACCAAGCCTGCGATCCGCCGTCTGGCTCGCCGCGGA 7913 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| | || || || |||| || || | ||| | || ||||| ||||| Sbjct 7914 GGCGTGAAGCGTATTTCGGGCCTGATCTACGAGGAAACTCGCGGCGTGCTGAAGGTCTTC 7973 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||||| || ||| ||||||||||| || | ||||| ||| Sbjct 7974 CTGGAGAACGTGATTCGCGATGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 8033 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | ||||| || ||||| || || ||||| Sbjct 8034 ACCGCCATGGACGTGGTCTACGCCTTGAAGCGCCAGGGCCG 8074 >seq38638 Length=25366 Score = 159 bits (176), Expect = 5e-35 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||||||||| || ||||| ||||||||||| || || Sbjct 10885 CTTCGCGATAACATCCAGGGCATCACCAAGCCTGCGATCCGCCGTCTGGCTCGCCGCGGA 10944 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| | || || || |||| || || | ||| | || ||||| ||||| Sbjct 10945 GGCGTGAAGCGTATTTCGGGCCTGATCTACGAGGAAACTCGCGGCGTGCTGAAGGTCTTC 11004 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | ||||| || ||| ||||||||||| || | ||||| ||| Sbjct 11005 CTGGAGAACGTGATTCGCGATGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 11064 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | ||||| || ||||| || || ||||| Sbjct 11065 ACCGCCATGGACGTGGTCTACGCCTTGAAGCGCCAGGGCCG 11105 >seq43442 Length=5948 Score = 152 bits (168), Expect = 8e-33 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| || || ||||| |||||||| || ||||||| || || Sbjct 3351 CTCCGCGATAACATCCAAGGCATTACGAAGCCGGCTATCCGCCGCTTGGCTCGCCGCGGA 3410 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || || | |||||||| |||| ||||||| |||| || |||||| | ||| Sbjct 3411 GGCGTGAAACGAATTTCTGGATTAATCTACGAAGAGACCCGTGGAGTCTTGAAGGTGTTC 3470 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| |||||| | ||| || |||||||||||| | ||||| || Sbjct 3471 CTGGAGAACGTGATCCGCGATGCTGTGACCTACACGGAGCACGCTAAAAGGAAGACCGTG 3530 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| | || || || |||| || ||||| |||| | || || ||||| Sbjct 3531 ACGGCCATGGACGTGGTGTACGCGCTGAAGCGCCAAGGGCGTACTTTGTACGGCTTTGG 3589 >seq99526 Length=13661 Score = 120 bits (132), Expect = 5e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| ||||| ||||| || || || || |||||||| || || Sbjct 12747 CTCCGCGATAACATCCAAGGCATCACAAAGCCCGCCATTCGCCGCCTGGCTCGGCGCGGC 12688 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| | || || | |||| || || | || | || ||||| ||||| Sbjct 12687 GGCGTGAAGCGAATTTCGGGGCTCATCTACGAGGAAACGCGGGGCGTCCTGAAGGTCTTC 12628 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || | || ||||||||||| || | ||||| ||| Sbjct 12627 CTAGAGAACGTGATCCGCGACGCGGTGACTTACACCGAGCACGCCAAGAGGAAGACGGTC 12568 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || |||||||| | ||||| || | || || |||||||| Sbjct 12567 ACGGCCATGGATGTGGTCTACGCCCTCAAGCGCCAAGGCCG 12527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78905076725124