Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq7215 93.3 5e-14 seq49828 91.5 2e-13 seq177 87.8 2e-12 >seq7215 Length=34700 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||| |||||| || || | || || | ||| ||||||||||| |||||||||||| Sbjct 16602 ATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCTTTAGCCAAAATATT 16661 Query 93188 GAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 || |||||| |||||||| || || ||||| || || |||||||| || | |||||| Sbjct 16662 GATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCTACTACACGTTC 16720 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 || ||||| | ||||| || || || |||||||| |||||||| | ||| ||||| || Sbjct 26459 ACCTCTTCAGCTGTCCAGAATGAAGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATGG 26518 Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690 |||||||| ||||| ||||||||||| | ||| ||||| Sbjct 26519 TATTGAATAGGAAAAATGACAAAACGTTGAGGATTATC 26556 >seq49828 Length=5021 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 || ||||| | ||||| || || || |||||||| |||||||| | ||| ||||| || Sbjct 777 ACCTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATGG 718 Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGGGTTATC 93690 |||||||| ||||| ||||||||||| | ||| ||||| Sbjct 717 TATTGAATAGGAAAAATGACAAAACGTTGAGGATTATC 680 >seq177 Length=121252 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || ||||||| | ||||| |||||||| ||||| || |||| || || Sbjct 52803 ATGTAGGTGTCTATTAACAAACTGTACATCTCAGAATGAACATTTTCTATTGATATCTGA 52744 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || || |||||||| | |||||| | ||||||||||||||| Sbjct 52743 AAGCCATAGAAACAGCGAGCTTCTGGGATCTGCACTTCTTG 52703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555565625308320