Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq29087 118 9e-22 seq174935 95.1 1e-14 >seq29087 Length=41947 Score = 118 bits (130), Expect = 9e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| || || || || || || || |||| || || ||||| | Sbjct 34617 AAAAATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCC 34676 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || || ||| | || || |||| || || || || ||||| || ||||| || || Sbjct 34677 CAGTGACACCATTGAGAATGTCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCTCCTGA 34736 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| || | || || ||||||||||| ||| | || ||| ||||||| ||||||| || Sbjct 34737 TCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTA 34796 Query 22395 CAACATTCAAAAAGAATCCACCATACAT 22422 |||||| || || || |||||| | ||| Sbjct 34797 CAACATCCAGAAGGAGTCCACCCTCCAT 34824 >seq174935 Length=570 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || || ||||| || || |||| || || ||||| || Sbjct 152 AAAATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 93 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| ||| | || || |||| || || || |||||||| || ||||| |||||| Sbjct 92 AGCGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGAT 33 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAG 22365 || || | || || ||||||||||||||| Sbjct 32 CAGCAGAGGCTCATCTTTGCCGGCAAACAG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418776181240420