Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq29087 159 6e-34 seq174935 122 2e-22 seq47242 87.8 3e-12 >seq29087 Length=41947 Score = 159 bits (176), Expect = 6e-34 Identities = 160/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || |||||||| || |||||||| || | |||||||| | Sbjct 35056 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCA 34997 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||| || || ||||| || || || || || || || |||||||||||||| || || | Sbjct 34996 GCTGTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGA 34937 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||||||||| ||| |||||||| | || || |||| ||||||||| || | Sbjct 34936 TCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTYC 34877 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | |||||| || || |||||||| Sbjct 34876 CAGTCAAGGTCTTCACRAAGATCTGCAT 34849 Score = 158 bits (174), Expect = 2e-33 Identities = 161/209 (77%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || |||||||| || |||||||| || | |||||||| | Sbjct 34828 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCA 34769 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| ||||| || || || || || || || || |||||||||||||| || || | Sbjct 34768 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGA 34709 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| |||||||| ||| |||||||| | || || |||| ||||||||| || | Sbjct 34708 TCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCC 34649 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || | |||||| || || ||||||||| Sbjct 34648 CAGTCAAGGTCTTCACAAAGATCTGCATT 34620 Score = 147 bits (162), Expect = 4e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || ||||| || |||||||| || |||||||| || | |||||||| | Sbjct 35284 CAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCCA 35225 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||| || || ||||| || || || || || || || |||||||||||||| || || | Sbjct 35224 GCTGTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGA 35165 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| |||||||| ||| |||||||| | || || |||| ||||||||| || | Sbjct 35164 TCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCC 35105 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | |||||| || || |||||||| Sbjct 35104 CAGTCAAGGTCTTCACAAAGATCTGCAT 35077 >seq174935 Length=570 Score = 122 bits (134), Expect = 2e-22 Identities = 118/149 (79%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 68315 CTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAAT 68374 ||| || ||||| || ||||| || || || ||||| ||||||||||||||||| || || Sbjct 3 CTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGGAT 62 Query 68375 CTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTC 68433 ||| |||||||| ||| |||||||| ||| | || || |||| ||||||||| || | Sbjct 63 CTTGGCCTTGACATTCTCAATGGTGTC-GCTGGGCTCCACCTCCAGGGTGATGGTCTTGC 121 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || | |||||| || || ||||||||| Sbjct 122 CGGTCAAGGTCTTCACAAAGATCTGCATT 150 >seq47242 Length=5371 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| ||||| ||||||||||| || || ||||| || || || || Sbjct 3408 CCTTCCTTGTCCTGAATTTTTGCCTTGACATTTTCAATTGTGTCACTTGGCTCCACCTCA 3467 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | |||||||||||| || |||||||| || || || ||||||||| || Sbjct 3468 AGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAAATCTGCATTGTG 3515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919478844540960