Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq10737 138 2e-27 seq162283 136 7e-27 seq177 84.2 4e-11 >seq10737 Length=39522 Score = 138 bits (152), Expect = 2e-27 Identities = 118/146 (81%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 |||| || |||||||||||| ||||||||||| || | ||||||||||| | ||||||| Sbjct 18999 ACCCGCTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGTGCCCTCTGC 18940 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| |||| || | || ||||||| ||| | |||||||||| Sbjct 18939 TCTTCCTTCCCGGTGTTCTTCTTCAGATCGAGGAATTCAAAGATGTCCATGTGCCAGGGC 18880 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGG 245148 |||| ||||| |||| ||| ||||| Sbjct 18879 TCCAGGTAGATGGCGAAGGCCCCGGG 18854 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933 || ||| || |||||||||||||||| ||||| | |||| || |||||||| | | || Sbjct 26582 GATGTTCAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCAGCGGCCATCTTCAGGAT 26523 Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCC 243993 | |||||| || ||||| || |||||||||||| |||| |||| |||||| | | | Sbjct 26522 GGTCTTCTGGGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAGGTCCTCGGGAATCTC 26463 Query 243994 TTCGATGTTCTG 244005 ||||||||| Sbjct 26462 CGGGATGTTCTG 26451 Score = 93.3 bits (102), Expect = 8e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933 || ||| || |||||||||||||||| ||||| | |||| || |||||||| | | || Sbjct 26773 GATGTTCAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCAGCGGCCATCTTCAGGAC 26714 Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGG 243987 | |||||| || ||||| || |||||||||||| |||| |||| |||||| Sbjct 26713 GGTCTTCTGGGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAGGTCCTCGGG 26660 >seq162283 Length=690 Score = 136 bits (150), Expect = 7e-27 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||| ||| | ||| ||||| || ||||||||||||||||| ||||||||||||| Sbjct 650 CCACCTCGTCCTGGCTGGAGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGG 591 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| |||||||| |||||||||||||||| ||||| Sbjct 590 TGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCG 531 Query 244824 CCCCGGTCTC 244833 ||| ||||| Sbjct 530 TCCCCGTCTC 521 >seq177 Length=121252 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || ||| | || ||||| || ||||||||||| || || || || |||| || | Sbjct 54599 TGGTTGCGTTTGCTGCTGTCGAAGGAATCTTCTTCTCTGGTGCTTTTGCAGCCATATTTT 54658 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 |||||||| ||| | || ||||| || || || ||||| || ||||| || ||||| | Sbjct 54659 GGCTCAAGAAGAGAGGGTTAATGCCAGGCCTTACTTTCTCCAATGAACTTATTAGCAGAG 54718 Query 42826 ACGA 42829 | || Sbjct 54719 ATGA 54722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942142808671680