Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq141878 114 1e-20 seq10737 86.0 6e-12 >seq141878 Length=967 Score = 114 bits (126), Expect = 1e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| || | ||| || || ||||||||||||||||||||||||||||| ||||| Sbjct 946 CACGGGGTCAGGAACAGCCTCCTGGTGGCCCCCATGCCCACGGCCTCCACGGCTCAGATT 887 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || || |||||||| ||| | || |||| |||| |||| | |||| | | ||||||||| Sbjct 886 CTGGGGAACAACGAATCGGTGGAGCCCTACACCAGCAACATCTACACCCGCCGGGTGCTC 827 Query 95197 GCCGGGGAATTCC 95209 | ||||| |||| Sbjct 826 TCAGGGGAGTTCC 814 >seq10737 Length=39522 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 94180 TTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAG 94239 ||||| |||| || |||||||||||| |||| | | ||| |||| ||| ||| Sbjct 18863 TTCGCCATCTACCTGGAGCCCTGGCACATGGACATCTTTGAATTCCTCGATCTGAAGAAG 18922 Query 94240 AACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGAC 94299 ||| ||| || || | ||||||| | |||||||||||||| |||||| | || ||| Sbjct 18923 AACACCGGGAAGGAAGAGCAGAGGGCACGGGACCTCTTCTACGCGCTCTGGATCCCGGAC 18982 Query 94300 CTTTTTATGAAACGCGTCGAGA 94321 || || ||||| || || |||| Sbjct 18983 CTCTTCATGAAGCGGGTGGAGA 19004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493572548045280