Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq162283 98.7 1e-15 seq29087 82.4 8e-11 >seq162283 Length=690 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 153641 GTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATT 153700 ||||| ||||||||||| ||||||||||||||| || ||| ||||| || ||||| || Sbjct 631 GTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTT 572 Query 153701 GCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 ||| || || ||||| | ||| ||| |||||||||| || Sbjct 571 GCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGG 533 >seq29087 Length=41947 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || ||| | || | ||| | | | |||||||| || |||||||||||| Sbjct 35304 GCCTCCTCTCAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 35245 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| || || || ||||| || | |||| || | ||| || || ||||| Sbjct 35244 GAGGGTACGGCCATCTTCCAGCTGTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGAGG 35185 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| || || | | || | |||||| | | |||||| Sbjct 35184 AATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 35125 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||||| || || ||||| |||||||| Sbjct 35124 CTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 35077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495108168096960