Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq13272 156 6e-33 >seq13272 Length=16287 Score = 156 bits (172), Expect = 6e-33 Identities = 206/283 (73%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 || || ||||||||||| || |||||| || | | || || ||||||||||| Sbjct 10302 GGGCAGCCCTTCACATTATTGCAGATGAGGCTTTGGAGTGAGGCTGTATTCACGATGTCA 10243 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 || || || || || || || || || |||||||| | || ||||||||||| || Sbjct 10242 AAGCCCACTCTACCCCCAAAAGTACTTGGCTTCCAGTATTCAGGTGAGCAGATGACATTT 10183 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 |||| || ||||||||||| || |||||||| || || || ||| ||||||| |||||| Sbjct 10182 CCCATAAGACCTTTCAAGGAGAAGGGAGCCCCAAGTTCAATCATGGTCTCACCAAAGATG 10123 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTAGAGTTCGACAGCCTCGACGTC 9132 || || || || || ||||| || | |||| ||| ||| | ||| | ||| || | || Sbjct 10122 GCTCCAGGGCGTGGCTTTTCAAC-AAGAAGAGCAGGGTATAATTCCATAGCATCAATATC 10064 Query 9133 GCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 |||||||| |||| | || ||||| || || || |||||| Sbjct 10063 TCCATAGAGCTCTTCAAGTTCTGCAGCCATTTCTTTTTCACCT 10021 Score = 104 bits (114), Expect = 3e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATA--CTTCGCGTCGCCTATGCGAAAAT 9550 |||||||||||||| | ||| || | |||| || ||| | | | ||| |||| Sbjct 8269 ATGGAATTGTTGTACATGAACTGCTGGTAAGTGTAGTCTTGGTTTTGGATAT--GAAAGG 8212 Query 9551 CATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCT 9610 |||||||| |||| ||||||| |||||||||| |||||||| || ||||||| ||||| Sbjct 8211 TATCAGGCAGAAGAGGATGCCAGTGGTAGAGGGTGTTGAACTCTGCTGCTATTCTGTTCT 8152 Query 9611 GGTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTA 9668 | |||||||| | ||| ||| || | || || ||||| | || | ||| ||||| Sbjct 8151 GATACTGAAATCGCTGGT--TGAAGAGAAGTTCTGGATCAAACTTCAGTTTGAAATGGTA 8094 Query 9669 CCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 || || | || || || || | | || | || || ||||||||||| Sbjct 8093 TCCACTTAAATGTTGCACGTAGTCTTCAATCACGATCTTGATGGTTTCCCC 8043 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 9754 TCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTC 9813 || ||| ||||||| |||||||| || || || || ||||||| || ||||| | Sbjct 7289 TCATCATCCCATTCTGGGTGTTCTCCCTTAAGGACGTCACAGACCCGATTATGTTCCCGG 7230 Query 9814 AGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACT 9873 ||||| | ||||| |||||||| | || || || || ||||| || || | || || Sbjct 7229 AGCCACAACGTGGCATACATCATCAGCCCTGGAACCAAGCCAAAGACCTCCTGTCCTACA 7170 Query 9874 GCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGCACCTGGGTCTCTTTG 9933 | ||| ||| | || || | | ||| | ||| | ||| | |||| || ||||| Sbjct 7169 GAAAATTTCAGGTGGTCAGGGATGTGGGGTGGATAGATCATTTCTGCCTGAGTTTCTTTC 7110 Query 9934 ACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 || || || ||||||||||| || ||||| | ||| Sbjct 7109 ACAGTAGGCGGATACATTTCTCCATCAATCATCTG 7075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722044717231200