Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq10737 125 1e-23 seq159814 102 1e-16 seq162283 89.7 8e-13 seq141878 89.7 8e-13 >seq10737 Length=39522 Score = 125 bits (138), Expect = 1e-23 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | ||||||| | ||| || | |||||| || || || | Sbjct 26834 CCTGCTTCCAGCCGTAGAAGTGCATGCTGGTCAGCTTCCCGTAGTTGGGCTCCGCAATAT 26775 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 | ||||||||||||||||| ||||||||||| | | |||| || |||||||| || | | Sbjct 26774 GGATGTTCAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCAGCGGCCATCTTCAGGA 26715 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 ||||||||| || |||||||||||||||||| Sbjct 26714 CGGTCTTCTGGGAGATCTCCCACACCGTCTTG 26683 Score = 120 bits (132), Expect = 5e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATC 204012 |||||| || || || || ||||||||||||||||| ||||||||||| | | |||| || Sbjct 26600 GTTGGGCTCCGCAATATGGATGTTCAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTC 26541 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG 204061 |||||||| || | ||||||||||| || |||||||||||||||||| Sbjct 26540 AGCGGCCATCTTCAGGATGGTCTTCTGGGAGATCTCCCACACCGTCTTG 26492 >seq159814 Length=719 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 214886 ACCGAATGCGGTGCGTGTCCCGCCAACCACTACACCGAATTTTGGAACTACCTGAACCGG 214945 ||||| ||| ||||| || | | ||||||||||| | ||||||||||||| || || Sbjct 450 ACCGAGTGCAAGCCGTGTGCCAACGAGCACTACACCGAGTATTGGAACTACCTGGACAGG 509 Query 214946 TGTCTGTACTGCGGCGTGCGATGCACAGAGCAGCAGGTGGAAAAATCGACCTGCAGCGCC 215005 ||| |||||||| |||| || || | || | | ||||||| | |||||| | Sbjct 510 TGTTTGTACTGCAGCGTCCGCTGTAACGACCTGGAGGTGGAGGTGGTGCCCTGCAACAAG 569 Query 215006 ACTCACAACAGAGTGTGCGAATGCAAGCCTGGCTACCAC 215044 || |||||||| |||||| | |||||| | ||||||||| Sbjct 570 ACCCACAACAGGGTGTGCCAGTGCAAGGCGGGCTACCAC 608 >seq162283 Length=690 Score = 89.7 bits (98), Expect = 8e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||||||||||||||| | ||| | |||||| | |||| | ||||||||| Sbjct 628 CTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCT 569 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA 204999 ||| ||||| |||||||||||||| | |||| | ||| | || ||||| ||||||| Sbjct 568 CTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGAGA 512 >seq141878 Length=967 Score = 89.7 bits (98), Expect = 8e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || || || ||||||| |||||| | | |||| ||||| | || || | || Sbjct 812 CTGGAACTCCCCTGAGAGCACCCGGCGGGTGTAGATGTTGCTGGTGTAGGGCTCCACCGA 871 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||| || | ||||||||| ||| ||||||||||||||| |||| || ||| Sbjct 872 TTCGTTGTTCCCCAGAATCTGAGCCGTGGAGGCCGTGGGCATGGGGGCCACCAGGAGGCT 931 Query 204316 GTTGCGCACACCGT 204329 ||| | || |||| Sbjct 932 GTTCCTGACCCCGT 945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793305788278080