Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq29087 122 9e-23 >seq29087 Length=41947 Score = 122 bits (134), Expect = 9e-23 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || || ||||||||| | || || ||| ||| Sbjct 34849 ATGCAGATCTTYGTGAAGACCTTGACTGGRAAGACCATCACCCTGGAGGTGGAGCCCAGT 34908 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || ||||| | || || Sbjct 34909 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCA 34967 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | |||||||||||||||||| || | ||||||||| ||||||||| Sbjct 34968 GCAGAGGCTGATCTTCGCGGGCAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 35027 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || ||| | || || ||| |||| || || Sbjct 35028 CATCCAGAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTGAGGGGTGG 35075 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || || ||||||||| | || || ||| ||| Sbjct 35077 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 35136 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || || || || ||||| | || || Sbjct 35137 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 35196 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | |||||||||||||||||| || | || |||||| |||||||||| Sbjct 35197 CAGAGGCTGATCTTCGCGGGCAAACAGCTGGAAGATGGCCGTACCCTCTCCGACTACAAC 35256 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || || ||| | || || ||| ||||||| ||| Sbjct 35257 ATCCAGAAGGAGTCTACCCTCCATCTTGTCCTCCGTCTGAGAGGAGGC 35304 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 |||||||||| || || || || || | || || || ||||||||| | || || ||| Sbjct 34616 AAAAAATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGC 34675 Query 38299 CCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 ||| |||| | | | | | || | || |||| || || || || ||||| | | Sbjct 34676 CCAGTGACACCATTGAGAATGTCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCTCCTG 34735 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | || ||| |||| || | || ||||| |||||||| || | ||||||||| ||||| Sbjct 34736 ATCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACT 34795 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| ||||| | || || ||| | || || ||| |||| || || Sbjct 34796 ACAACATCCAGAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTGAGGGGTGG 34847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499009473093120