Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq589 253 8e-62 seq21484 100 1e-15 seq59098 98.7 4e-15 seq12740 87.8 7e-12 >seq589 Length=133378 Score = 253 bits (280), Expect = 8e-62 Identities = 1039/1608 (65%), Gaps = 59/1608 (4%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || || || ||||| | || ||||| | || || || || |||| ||| | || || Sbjct 68467 GCCATAGGCATTGACTTGGGCACCACATACTCCTGCGTCGGAGTTTTCCAGCACGGGAAA 68526 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || || ||||| || || |||||||| || ||||| || | || |||||| Sbjct 68527 GTGGAGATTATCGCCAACGACCAAGGCAACCGCACTACACCGAGCTATGTTGCCTTTACG 68586 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAA 451091 || | ||| | || | || | || || || ||||| | || ||| |||| | Sbjct 68587 GACACTGAACGCCTCATCGGAGATGCAGCCAAGAATCAAGTGGCTATG--AATCCCAACA 68644 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 |||| | | |||||| || ||| | |||||||| | | |||||| ||| || || Sbjct 68645 ACACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAATTTGATGACTCTACGGTGCAGT 68704 Query 451152 AAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAG 451211 || | || || ||| ||| || | | || || |||||| | | |||| Sbjct 68705 CCGATATGAAGCACTGGCCTTTCCGTGTGGTGAGTGAAGCTGGGAAGCCCAAGGTACAAG 68764 Query 451212 TAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTA 451271 | | ||||| |||| | || || || ||||||||||||||| |||||||| | | Sbjct 68765 TCGAGTATAAGTGTGAGATCAAGACCTTCTTTCCTGAAGAAATTTCCTCTATGGTATTGA 68824 Query 451272 CTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGA-TGCAGTAATT 451330 | |||||||| |||| ||| || || | |||| ||| | || ||| |||||| Sbjct 68825 CCAAAATGAAGGAAATAGCTGAGGCTTACCTGGGTTGCAAAGTC-CAGAGTGCTGTAATT 68883 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 ||||| || || || |||||||| | ||||| ||||| || |||||||| || ||| Sbjct 68884 ACTGTACCTGCATACTTCAATGACTCCCAACGCCAAGCCACCAAAGATGCCGGTACCATT 68943 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 | ||| | ||||| | || || |||||||| || || || ||||| | || ||||| Sbjct 68944 ACAGGTCTCAATGTATTGCGCATCATTAATGAGCCCACGGCTGCTGCCATTGCCTATGG- 69002 Query 451451 CTAGGAAAATCAAAAGA----AACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 | ||| || || || | ||| || || ||| | | | ||||| || ||||| Sbjct 69003 TTTGGATAAAAAAGGGAGCAGAGCAGGTGAGAAGAATGTGCTGATCTTTGACTTGGGTGG 69062 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 || || |||| ||| | | | ||||||||||| | |||||||| || | || Sbjct 69063 TGGCACATTTGATGTTTCCATTTTGACTATTGAAGATGGCATCTTTGAAGTGAAATCTAC 69122 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTG-GAATGGTTGA 451625 ||| ||||| ||| | || || || || |||| ||| || ||| | ||| Sbjct 69123 TGCTGGAGATACCCATTTGGGTGGGGAGGACTTTGACAATCGCATGGTGAGCCATTTTGT 69182 Query 451626 AAACTGATGTTCAA-CGAAAAC-TAAAAGTAGATATTTCTACTAACCAAAAAGCACTTAG 451683 | | ||||| || || | ||| || || ||| || ||| | |||| || | Sbjct 69183 GGA--GGAATTCAAGCGCAAGCATAAGCGT-GACATTGCTGGCAACAAGCGAGCAGTTCG 69239 Query 451684 ACGTCTTAAAACATCAGCAGAAAAAGCTAAAATTACACTCAGTTCAACACAAACTA--CT 451741 ||| || ||| | |||| ||| ||| ||| || ||||| | | | | | || Sbjct 69240 ACGGCTCCGCACAGCCTGTGAAAGAGCCAAACGTACCCTGAGTTC--CTCCACCCAGGCT 69297 Query 451742 AGTATAAACATTGATAGTTTAGTTGATGGAATGGATTATGCTACTACTC--TTACCCGTG 451799 ||| | ||||| ||| ||||||| || ||| | |||| || |||| |||| Sbjct 69298 TCTATTGAGATTGACTCATTATTTGATGGCATTGAT--TTCTACACATCAATTACTCGTG 69355 Query 451800 CTAAATTTGA----ATCAATTTGTTCCAGTATTTTTGCACGGGTA--ATGAAACCTGTTG 451853 || ||||| |||| || | || | | | |||| | ||||||| | Sbjct 69356 CTCGCTTTGAGGAGCTCAA--TGCT----GATCTCTTCCGTGGTACTCTTGAACCTGTGG 69409 Query 451854 ATCAAGTATTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAAATTGTGCTTGTAG 451913 | | | | | |||| |||| | |||| ||||| |||||||||| || || | Sbjct 69410 AGAAGGCTCTTCGTGATGCTAAGCTAGACAAAGGACAAATTAATGAAATTGTTCTGGTTG 69469 Query 451914 GAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----GTCTTCTTATTTTGGAGGA 451969 | || || || || || || || || ||| | || | | |||| ||| ||| Sbjct 69470 GTGGCTCAACTCGTATCCCCAAGATCCAAAAGTTGCTCCAAGACTTC----TTTAATGGA 69525 Query 451970 AAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAA 452029 ||| | ||| || ||| ||||||||||||||||||| |||||||||||||| || || Sbjct 69526 AAAGAGCTAAACAAAAGCATAAATCCTGATGAAGCTGTGGCATATGGTGCTGCTGTGCAG 69585 Query 452030 GCAGCTATTCTAACAGGT-TCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGT 452088 || |||||||||| ||| || || ||||| | ||| ||||| | | ||||| Sbjct 69586 GCTGCTATTCTAATGGGTGACAAAT-CCGAAAATGTGCAAGACCTTCTGCTGCTTGATGT 69644 Query 452089 AACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACG 452148 | |||| || ||||| || |||| || |||||||| |||||||| ||||| ||||| Sbjct 69645 AGCACCACTTTCTCTGGGTATTGAGACTGCTGGTGGTGTGATGACTGCCTTAATCAAACG 69704 Query 452149 AGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACC 452208 || ||||||| || | | || || || | || | | | | | ||||| Sbjct 69705 TAACACAACTATTCCCACCAAGCAAACCCAGACCTTCA--CCACCTATTCAGA--CAACC 69760 Query 452209 AG----GTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATA 452264 || |||| | ||||||| ||| || || | || ||||| || ||||| Sbjct 69761 AGAGTAGTGTGCTGGTACAAGTGTATGAGGGTGAGAGAGCCATGACTAAGGACAATAACC 69820 Query 452265 AACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTG 452324 || || | ||| || | ||||| ||| || | || || ||||||| Sbjct 69821 TGCTGGGCAAGTTTGACCTGACGGGTATTCCACCTGCACCTCGTGGTGTGCCCCAAATTG 69880 Query 452325 AAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGA-AAAATCA 452383 | | || | ||| |||||||||||||||| || ||||| | |||||| || || | || Sbjct 69881 AGGTGACATTTGACATTGATGCAAATGGTATCCTCAATGTTACTGCAGTGGACAAGAGCA 69940 Query 452384 TCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGA 452442 | |||||| |||| || |||||||| |||||||| ||| || | ||||| || Sbjct 69941 -CAGGAAAA-GAGAATAAGATTACAATAACTAATGACAAAGGGCGCCTCAGCAAAGATGA 69998 Query 452443 TATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 ||||| ||||| | |||||||| | ||||| || ||||| Sbjct 69999 CATTGACCGCATGGTGCAAGAAGCAGAGCGTTACAAGGCAGAGGATGA 70046 >seq21484 Length=40370 Score = 100 bits (110), Expect = 1e-15 Identities = 116/154 (75%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||| || | || || || |||||||||||||| | || || || || || Sbjct 39022 GTTACAAATGCCGTGGTCACAGTCCCAGCTTATTTCAATGACTCCCAGCGTCAGGCTACA 38963 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||||||||| | ||||| || |||||||||||||| || || ||| Sbjct 38962 AAAGATGCCGGAACCATTGCTGGTCTCAATGTGCTCCGAATTATTAATGAGCCAACCGCA 38903 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAG 451466 ||||| | || || || || ||| || ||||| Sbjct 38902 GCTGCAATTGCTTACGG-CTTGGACAA--AAAAG 38872 >seq59098 Length=8879 Score = 98.7 bits (108), Expect = 4e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 451314 TTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTA 451373 |||| |||||||||| || || || |||||||| || || | || |||||||| || | Sbjct 2005 TTACCAATGCAGTAATCACAGTCCCAGCTTATTTTAACGACTCTCAGCGGCAAGCTACCA 1946 Query 451374 AAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAG 451433 ||||||| || |||||||| | ||||||||||| || || || ||||| || |||| Sbjct 1945 AAGATGCTGGCACCATTGCTGGCCTGAATGTTCTTCGCATCATCAACGAACCCACCGCAG 1886 Query 451434 CTGCTCTAGCATATGGACT 451452 | || | || ||||| || Sbjct 1885 CAGCCATTGCGTATGGTCT 1867 >seq12740 Length=33937 Score = 87.8 bits (96), Expect = 7e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || ||||||||||| ||||| |||||||| || |||||| | || |||||||||| || Sbjct 12931 GCCACTAAAGATGCTGGACAGATTGCTGGGTTGAATGTTTTGAGAGTTATTAATGAGCCA 12872 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAG 451454 ||||| || || ||||| |||||| ||| Sbjct 12871 ACAGCTGCAGCCCTAGCTTATGGATTAG 12844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1971008294743344