Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq589 410 2e-109 seq21484 203 4e-47 seq15939 140 4e-28 seq59098 123 3e-23 seq7215 82.4 1e-10 >seq589 Length=133378 Score = 410 bits (454), Expect = 2e-109 Identities = 1042/1573 (66%), Gaps = 28/1573 (2%) Strand=Plus/Minus Query 6590 TCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTA 6649 || || ||||| ||||| |||||||| ||||| | | ||| || ||||| || Sbjct 70025 TCTGCTTCTTGCACCATGCGGTCAATGTCATCTTTGCTGAGGCGCCCTTTGTCATTAGTT 69966 Query 6650 ATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCA 6709 || |||||||| | ||| || | | ||| || | ||| | ||||| | |||||| Sbjct 69965 ATTGTAATCTTATTCTCTTTTCCTGTGCTCTTGTCCACTGCAGTAACATTGAGGATACCA 69906 Query 6710 TTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATA 6769 |||||||||| || || | || | |||||| || ||| | ||||| | ||||||| Sbjct 69905 TTTGCATCAATGTCAAATGTCACCTCAATTTGGGGCACACCACGAGGTGCAGGTGGAATA 69846 Query 6770 CCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCA 6829 ||||| | ||||| | || || | | || ||| | | | | | ||||| ||| Sbjct 69845 CCCGTCAGGTCAAACTTGCCCAGCAGGTTATTGTCCTTAGTCATGGCTCTCTCACCCTCA 69786 Query 6830 TAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTC 6889 || |||| | ||| | || || ||| || | |||| | || || | Sbjct 69785 TACACTTGTACCAGCACACTACTCTGGTTGTCTGAATAGGTGGTGAAGGTCTGGGTTTGC 69726 Query 6890 TTAGATGGAATCGTCGTATTTC-TCGGAATAACCGGGGTCATAATACCACCCATAGTTTC 6948 || | ||||| || || || | | || ||| | ||||| | |||||| ||| || Sbjct 69725 TTGGTGGGAATAGTTGTGTTACGTTTGATTAAG-GCAGTCATCACACCACCAGCAGTCTC 69667 Query 6949 GAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCC 7008 | || ||||| || |||| || || | || | |||||||| ||| |||| Sbjct 69666 AATACCCAGAGAAAGTGGTGCTACATCAAGCAGCAGAAGGTCTTGCACATTTTCGGATTT 69607 Query 7009 TTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTT 7068 |||||| ||| || || || || || | || || ||||| || || ||||| || || Sbjct 69606 GTCACCCATTAGAATAGCAGCCTGCACAGCAGCACCATATGCCACAGCTTCATCAGGATT 69547 Query 7069 AATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGG 7128 || |||| || || ||||| || ||||| | || | || | ||| || || || Sbjct 69546 TATGCTTTTGTTTAGCTCTTTTCCATTAAAGAAGTCTTGGAGCAACTTTTGGATCTTGGG 69487 Query 7129 GATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGA 7188 ||| || || || ||||| |||| ||| |||||||| | || ||| || | ||| | Sbjct 69486 GATACGAGTTGAGCCACCAACCAGAACAATTTCATTAATTTGTCCTTTGTCTAGCTTAGC 69427 Query 7189 GTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC 7248 || ||||| | || || |||||||| | | |||||| | || | || || Sbjct 69426 ATCACGAAGAGCCTTCTCCACAGGTTCAAGAGTACCACGGAAGAGATCAGCATTGAGCTC 69367 Query 7249 CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT 7308 |||||| || ||||| ||||| ||||| |||||||||| ||| || |||| || ||||| Sbjct 69366 CTCAAAGCGAGCACGAGTAATTGATGTGTAGAAATCAATGCCATCAAATAATGAGTCAAT 69307 Query 7309 TTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCG 7368 ||||| | | || | | ||| | || || || || | ||||| || || || Sbjct 69306 CTCAATAGAAGCCTGGGTGGAGGAACTCAGGGTACGTTTGGCTCTTTCACAGGCTGTGCG 69247 Query 7369 TAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC 7428 | || |||| || ||| ||| || | ||| || |||||| || || || || || Sbjct 69246 GAGCCGTCGAACTGCTCGCTTGTTGCCAGCAATGTCACGCTTATGCTTGCGCTTGAATTC 69187 Query 7429 TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488 || || || | | | | || || || || |||||||| || ||||| || Sbjct 69186 CTCCACAAAATGGCTCACCATGCGATTGTCAAAGTCCTCCCCACCCAAATGGGTATCTCC 69127 Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548 || || | ||| ||||||||||| || ||||||| | || | ||||||||||| || Sbjct 69126 AGCAGTAGATTTCACTTCAAAGATGCCATCTTCAATAGTCAAAATGGAAACATCAAATGT 69067 Query 7549 ACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTC------TTATC 7602 |||||||||| |||||| || || || ||| | || | || || || ||||| Sbjct 69066 GCCACCACCCAAGTCAAAGATCAGCACATTCTTCTCACCTGCTCTGCTCCCTTTTTTATC 69007 Query 7603 GAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG-AAGACAGTTCAGGC 7661 | ||| || || || || || ||||| || |||||||| || || || ||| || || | Sbjct 69006 CAAACCATAGGCAATGGCAGCAGCCGTGGGCTCATTAATGATGCGCAATACA-TTGAGAC 68948 Query 7662 CAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGA 7721 | | ||| || | |||||||| || ||||| ||||| || || || ||||| || || | Sbjct 68947 CTGTAATGGTACCGGCATCTTTGGTGGCTTGGCGTTGGGAGTCATTGAAGTATGCAGGTA 68888 Query 7722 CCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTT 7781 | || | || || | |||||| ||| || || | || || || || ||||||| Sbjct 68887 CAGTAATTACAGCACTCTGGACTTTGCAACCCAGGTAAGCCTCAGCTATTTCCTTCATTT 68828 Query 7782 TGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA-ACTGT-TTCGTTTCACCGTTAAA 7839 |||| | ||||| || ||||| ||||||| | || | || || | |||| ||| | Sbjct 68827 TGGTCAATACCATAGAGGAAATTTCTTCAG--GAAAGAAGGTCTTGATCTCACACTTATA 68770 Query 7840 ATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTA---TACGACCAATC 7896 || |||| | | |||| || | || ||| | ||| | | | ||| | Sbjct 68769 CTCGACTTGTACCTTGGGCTTCCCAGCTTCAC------TCACCACACGGAAAGGCCAGTG 68716 Query 7897 TTTCATATCGTCTTGGACCTGTTG-GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCAT 7955 ||||||||| || ||| || | ||| ||| || | || || |||||||| |||| Sbjct 68715 CTTCATATCGGACTGCACC-GTAGAGTCATCAAATTTGCGGCCAATGAGACGCTTGGCAT 68657 Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 |||| | ||||| ||||| ||||| || ||| ||||| || || || ||||| || | Sbjct 68656 CAAAGATGGTGTTGTTGGGATTCATAGCCACTTGATTCTTGGCTGCATCTCCGATGAGGC 68597 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCG 8075 |||| | | |||||||| || || || || || || || || ||||||||||| | Sbjct 68596 GTTC---AGTGTCCGTAAAGGCAACATAGCTCGGTGTAGTGCGGTTGCCTTGGTCGTTGG 68540 Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 | ||||| || || ||| || | || |||||||| || || || || || || | Sbjct 68539 CGATAATCTCCACTTTCCCGTGCTGGAAAACTCCGACGCAGGAGTATGTGGTGCCCAAGT 68480 Query 8136 CAATACCGATTGC 8148 |||| || || || Sbjct 68479 CAATGCCTATGGC 68467 >seq21484 Length=40370 Score = 203 bits (224), Expect = 4e-47 Identities = 369/540 (68%), Gaps = 0/540 (0%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || || ||||||||||| || | || || |||||||| ||||| || Sbjct 38197 GCACCGTAGGCTACGGCTTCATCGGGGTTGATACTCTTGTTGAGTTCTTTGCCGTTGAAG 38256 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | | || || || || |||||||| || || ||||| |||| ||||| Sbjct 38257 AAATCCTGAAGGAGTTTCTGGATCTTGGGGATTCGGGTGGACCCACCAACCAGCACGATA 38316 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | ||| | |||||||| | ||| | || || || | ||| || ||||| |||| Sbjct 38317 TCGTGCACCTGAGATTTATCCAGCTTGGCATCCCGCAGCGCTTTCTCCACAGGGTCCAGC 38376 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||||||| ||| || || || || || ||||| ||||| || ||| Sbjct 38377 GTGCCGCGGAACAAGTCGGCGTTCAGCTCTTCGAAGCGAGCTCGGGTGATGGAAGTGTAG 38436 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||||| ||| ||||| | || ||||||||||| | | || | | || || | Sbjct 38437 AAATCAATGCCCTCGTACAGGGAGTCAATTTCAATACTGGCCTGAGTGCTGGAGGACAGG 38496 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || || ||||| ||||| || || || || | || || | ||||||| ||| || Sbjct 38497 GTGCGTTTTGCCCGCTCGCAGGCGGTGCGCAGGCGCCGGACGGCACGCTTGTTTTCGCTG 38556 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| || || || || ||||| ||| || | | | ||| Sbjct 38557 ATGTCCTTCTTGTGCTTCCGCTTGAACTCGGTGATGAAATGGTTGACCATCCGGTTGTCG 38616 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || ||||| || |||||||| || || |||||||||| ||| ||||||||||| || || Sbjct 38617 AAGTCTTCGCCGCCCAAGTGGGTGTCTCCCGCGGTCGATTTCACTTCAAAGATGCCGTCT 38676 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 || ||| | | | || || || || || || || ||||| || || || || || ||| Sbjct 38677 TCGATGGTCAGGATGGAGACGTCGAAAGTTCCCCCTCCCAGATCGAAGATCAGCACATTC 38736 Score = 82.4 bits (90), Expect = 1e-10 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 7607 CCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGC 7665 ||||| || || || || || ||||| ||||||||||| || || ||| || || ||||| Sbjct 38886 CCGTAAGCAATTGCAGCTGCGGTTGGCTCATTAATAATTCGGAGCACA-TTGAGACCAGC 38944 Query 7666 AATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 ||| ||| | |||||||| || || || || || || || || || || || ||||| || Sbjct 38945 AATGGTTCCGGCATCTTTTGTAGCCTGACGCTGGGAGTCATTGAAATAAGCTGGGACTGT 39004 Query 7726 TACGACCGC 7734 || || || Sbjct 39005 GACCACGGC 39013 >seq15939 Length=30254 Score = 140 bits (154), Expect = 4e-28 Identities = 465/713 (65%), Gaps = 19/713 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || || || |||||||| || ||||| ||||| || |||||||||||||| || Sbjct 1311 TCAAAGTCCTCCCCGCCCAAGTGGGTGTCCCCTGCGGTGGCCTTGACTTCAAAGATGCCG 1252 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | ||||||||||| || || |||||||||||||||||||| | | Sbjct 1251 TCCTCCATGGAAAGGATAGAAACATCAAAGGTGCCCCCACCCAGGTCAAAAATGAGGATG 1192 Query 7577 -TTCG--TATCGTCGTCTTTGTTCTT---ATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 |||| | | | | || ||| | ||| || ||||| || || || || || || Sbjct 1191 TTTCGGCTGCCAGCCTTTTGATTCCTGGCATCCAGGCCGTAGGCAATGGCAGCTGCTGTG 1132 Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 ||||| || | | || | ||||| ||||| | | ||||| | || || Sbjct 1131 GGTTCGTTTAGGAGCTTTAGGATCTGGAGGCCCGCAATGACTCCAGCATCAATGGTGGCC 1072 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 || || || | |||| | |||||||| || ||||| |||| || | | || Sbjct 1071 TGCCGCTGAGCATCGCTGAAGTAGGCGGGCACCGTGACGATGGCTTGGGAGATGGAGGAG 1012 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 || || || | || || | | ||||| |||| || ||||| | || ||||| ||| Sbjct 1011 CCCAGGTAGGCCTCAGCTGTTTGCTTCATCTTGGCCAGGACCATGGCAGAGATCTCCTCA 952 Query 7811 GCCGCAAACTGTTTCGT--TTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAG 7868 | | || | | ||| || ||| || |||| | | | | || ||| Sbjct 951 G--GGTAAAAGGTCCGTTGTTTACCTTTGTGGGAGACTTGGACCTTTAGCTTCTCC---T 897 Query 7869 CACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAA 7928 ||| | | || || | | ||| | |||||| || || || || ||| | Sbjct 896 CACGGCTCACCACAGTAAATGGCCAGTGTTTCATGTCCTCCTGTACAGCGGCATCCTCAT 837 Query 7929 ACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTT 7988 |||| | || || || ||||| ||||| || || ||||| | |||||| | | | | Sbjct 836 ACTTGCGGCCAATCAGCCGCTTGGCATCGAACACCGTGTTCTGGGGGTTGAGAGAGGCCT 777 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048 || |||| || | ||| || || || |||| | || || || || ||||| | || Sbjct 776 GGCTCTTGGCTGGGTCTCCAATCAGGTGTTCTGTGTT---GGTGAAGGCCACGTA-GCTG 721 Query 8049 GG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACG 8107 || || || || ||||||||||| || ||||| || ||||| ||||| ||| ||||| Sbjct 720 GGTGTGGTCCGCTTCCCTTGGTCATTGGCAATGATCTCTACTTTGTCGTGTTGGCAGACA 661 Query 8108 CCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCATTTT 8160 | ||||| || | || ||||| | ||||| || || || | |||||||| Sbjct 660 GCCACGCAGGAGAAGGTGGTTCCAAGGTCAATCCCAATAGCCAG-GTCATTTT 609 >seq59098 Length=8879 Score = 123 bits (136), Expect = 3e-23 Identities = 231/337 (69%), Gaps = 2/337 (1%) Strand=Plus/Plus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302 ||| || ||||| || || ||||| ||||| || ||||| |||| ||| || || | || Sbjct 819 CAGCTCTTCAAAGCGAGCCCGGGTGATGGAGGTGTAGAAGTCAATGCCCTCATAGAGGGA 878 Query 7303 ATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGC 7362 ||||||||||||| | || | | || | || ||||| || ||||| || || Sbjct 879 GTCAATTTCAATGGAAGCCTGGGTGGAGGAGCTGAGGGTGCGCTTGGCCCGCTCGCAAGC 938 Query 7363 CGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTT 7422 || || | || || | ||| ||| || | | || || |||||||| || || || Sbjct 939 TGTGCGCAGCCGCCGGACGGCCCGCTTATTGTCCGTGATGTCCTTCTTATGCTTGCGCTT 998 Query 7423 AAACTCTT-CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 || || || | ||||| | | | || ||||| || ||||||| ||| | Sbjct 999 GAATTCCGACACA-AAGTGGTTCACCATGCGATTGTCAAAATCCTCGCCACCCAGGTGAG 1057 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || || |||| ||| ||||||||||| || | ||||| | | | || |||| Sbjct 1058 TGTCTCCAGCTGTCGATTTCACTTCAAAGATGCCATCCTCAATCGTCAGAATGGACACAT 1117 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 |||| || |||||||||||||||||||| || || || Sbjct 1118 CAAAGGTGCCACCACCCAGGTCAAAAATAAGGACATT 1154 Score = 102 bits (112), Expect = 1e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || ||||| ||||| ||||| || || || || || ||||| || || || |||||| Sbjct 1858 TTTTTATCCAGACCATACGCAATGGCTGCTGCGGTGGGTTCGTTGATGATGCGAAGAACA 1917 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 |||||||||||||| || | |||||||| || ||||| || || || |||||||| || Sbjct 1918 TTCAGGCCAGCAATGGTGCCAGCATCTTTGGTAGCTTGCCGCTGAGAGTCGTTAAAATAA 1977 Query 7715 GCCGGGACCGT 7725 || ||||| || Sbjct 1978 GCTGGGACTGT 1988 >seq7215 Length=34700 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 115062 ATAATCACCGACGCGCTTTTCAAAAAAGTTTGTTTTGCCGTCGAGTGATATATTCTCCAT 115121 ||| || || || ||||||||||| ||||| |||||||| || || || ||||||||||| Sbjct 15040 ATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTCTCCAT 15099 Query 115122 AAAATCAAAGGGATT 115136 ||| ||||| ||||| Sbjct 15100 AAAGTCAAATGGATT 15114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633655576377120