Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq29087 140 7e-28 seq174935 93.3 9e-14 >seq29087 Length=41947 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| |||| || || | |||||||| Sbjct 35057 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 34998 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || |||||||| || | || || || |||||||||||||| || || || Sbjct 34997 AGCTGTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGG 34938 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||||||||||||||||||||| ||| ||||| || ||||| | ||| Sbjct 34937 ATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 34881 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || || || || | ||||| Sbjct 34880 TTYCCAGTCAAGGTCTTCACRAAGATCTGCAT 34849 Score = 134 bits (148), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| |||| || || | |||||||| Sbjct 34829 ACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 34770 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || |||||||||||||| || || || Sbjct 34769 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGG 34710 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| |||||||||||||| ||| ||||| || ||||| | ||| Sbjct 34709 ATCTTAGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 34653 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || ||||| || || || || | ||||||| Sbjct 34652 TTCCCAGTCAAGGTCTTCACAAAGATCTGCATTT 34619 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || || ||||| || || || ||||| |||| || || | |||||||| Sbjct 35285 ACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCC 35226 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || |||||||| || | || || || |||||||||||||| || || || Sbjct 35225 AGCTGTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGG 35166 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| |||||||||||||| ||| ||||| || ||||| | ||| Sbjct 35165 ATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 35109 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| || || || || | ||||| Sbjct 35108 TTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 35077 >seq174935 Length=570 Score = 93.3 bits (102), Expect = 9e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || | || || || |||||||||||||| ||||| || Sbjct 1 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGG 60 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| |||||||||||||| ||||| || ||||| | ||||| Sbjct 61 ATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 120 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || ||||| || || || || | ||||||| Sbjct 121 CCGGTCAAGGTCTTCACAAAGATCTGCATTT 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106836600026156