Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq29087 96.9 2e-15 >seq29087 Length=41947 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| |||||||| || |||||||| Sbjct 34811 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 34752 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || | || | || ||||| || ||||| ||||| || Sbjct 34751 ATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTAGCCTTGAC--AT 34694 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| ||||| || || || | ||||||| Sbjct 34693 TCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCA 34634 Query 34969 CAAAGATCTGCATATT 34984 ||||||||||||| || Sbjct 34633 CAAAGATCTGCATTTT 34618 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| ||||||||||| || || || Sbjct 35039 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCCGCGAAG 34980 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || | || | || ||||| || ||||| |||||| Sbjct 34979 ATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTC 34920 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || | |||||||| Sbjct 34919 TCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTYCCAGTCAAGGTCTTCACR 34860 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 34859 AAGATCTGCAT 34849 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| ||||||||||| || || || Sbjct 35267 TCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGTTTGCCCGCGAAG 35208 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || | || | || ||||| || ||||| ||||| || Sbjct 35207 ATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGAC--AT 35150 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| ||||| || || || | ||||||| Sbjct 35149 TCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCA 35090 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 35089 CAAAGATCTGCAT 35077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323897427167904