Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7215 123 3e-23 seq49828 91.5 2e-13 seq177 86.0 7e-12 >seq7215 Length=34700 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| |||| ||||||||||| || | ||||||||||| |||| ||| | Sbjct 16588 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCT 16647 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||| ||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 16648 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 16707 Query 19103 CAACTA 19108 | |||| Sbjct 16708 CTACTA 16713 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 ||| |||| ||| | ||| || | |||||| ||||||||||||||||| || || || || Sbjct 18650 ATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 18709 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | ||||||||| | |||||||| Sbjct 18710 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 18754 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 ||| |||| ||| | ||| || | |||||| ||||||||||||||||| || || || || Sbjct 22598 ATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 22657 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | ||||||||| | |||||||| Sbjct 22658 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 22702 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| ||||| ||||||||| || ||||| ||| || || || ||| || ||||| Sbjct 14977 TTAGAAATCTGCATCCAAAGTGAATGAATTATCTGCAG--GACTTGACATCACACCCATC 15034 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||||||||| | || | ||||||||||| |||||||| || || | || ||| Sbjct 15035 CTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTC 15094 Query 18730 TCCATAAAATCAAATGGATT 18749 |||||||| ||||||||||| Sbjct 15095 TCCATAAAGTCAAATGGATT 15114 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521 || |||||| ||||||| || |||||||||||||| || ||||| | ||| || ||| | Sbjct 26459 ACCTCTTCAGCTGTCCAGAATGAAGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATGG 26518 Query 19522 TATTGTATAGGAAATATAACAAA 19544 ||||| |||||||| || ||||| Sbjct 26519 TATTGAATAGGAAAAATGACAAA 26541 >seq49828 Length=5021 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 ||| |||| ||| | ||| || | |||||| ||||||||||||||||| || || || || Sbjct 4639 ATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 4580 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | ||||||||| | |||||||| Sbjct 4579 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 4535 >seq177 Length=121252 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||| | || | ||||| || ||||||||||| || ||||||| ||||||||| | Sbjct 52810 ATCTTTGATGTAGGTGTCTATTAACAAACTGTACATCTCAGAATGAACATTTTCTATTGA 52751 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 |||||||| || || ||||| | ||||||| ||||| ||||| Sbjct 52750 TATCTGAAAGCCATAGAAACAGCGAGCTTCTGGGATCTGCACTTC 52706 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/121 (77%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521 || ||||| |||||||| |||||||||| || | || ||||| |||||||||||| | Sbjct 51407 ACCTCTTCTACTGTCCAGAAAGAAGCCTGAGCCTGCTTGTACATTTTCCATATATCAGGG 51348 Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATT-TTCTTTAAGAATAGGTTC--CATT 19578 ||||| || || || || ||||||| || ||| ||| ||||| | |||||| |||| Sbjct 51347 TATTGGATTGGGAAGATGACAAATCGATGGGGATTCTTCCTTAAG-AGAGGTTCTTCATT 51289 Query 19579 T 19579 | Sbjct 51288 T 51288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560801419247520