Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq589 217 1e-50 seq59098 132 4e-25 seq29087 91.5 1e-12 >seq589 Length=133378 Score = 217 bits (240), Expect = 1e-50 Identities = 380/548 (69%), Gaps = 4/548 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || ||||| || || || || |||||||| || || || |||| || | || ||| Sbjct 68467 GCCATAGGCATTGACTTGGGCACCACATACTCCTGCGTCGGAGTTTTCCAGCACGGGAAA 68526 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || ||||| ||||| || ||||| ||| | ||||| || |||||| | || ||| Sbjct 68527 GTGGAGATTATCGCCAACGACCAAGGCAACCGCACTACACCGAGCTATGTTGCCTTTACG 68586 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || ||||||| | | || |||||||| || |||||| || ||||| | ||| Sbjct 68587 GACACTGAACGCCTCATCGGAGATGCAGCCAAGAATCAAGTGGCTATGAATCCCAACAAC 68646 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| || ||| | ||||| | | ||| |||| || || || ||| | Sbjct 68647 ACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAATTTGATGACTCTACGGTGCAGTCC 68706 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 ||||||||||| |||||||||| | || | || |||| || || | | ||| | Sbjct 68707 GATATGAAGCACTGGCCTTTCCGTGTGGTGAGTGAAGCTGGGAAGCCCAAGGTACAAGTC 68766 Query 550291 TACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | || ||| | | | || | || | || ||| ||||||| |||||||| || | Sbjct 68767 GAGT-AT-AAGTGTGAGATCAAGACCTTCTTTCCTGAAGAAATTTCCTCTATGGTATTGA 68824 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 |||||||| ||| ||| |||| | ||| |||| | ||| ||||| | Sbjct 68825 CCAAAATGAAGGAAATAGCTGAGGCTTACCTGGGTTGCAAAGTCCAGAGTGCTGTAATTA 68884 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 ||||||| ||||| || |||||||| ||||| ||||| || |||||||| || ||| Sbjct 68885 CTGTACCTGCATACTTCAATGACTCCCAACGCCAAGCCACCAAAGATGCCGGTACCATTA 68944 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | || || ||||| | || || || ||||| || || |||||||| |||| ||||| Sbjct 68945 CAGGTCTCAATGTATTGCGCATCATTAATGAGCCCACGGCTGCTGCCATTGCCTATGGTT 69004 Query 550530 TTGATAAA 550537 | |||||| Sbjct 69005 TGGATAAA 69012 Score = 147 bits (162), Expect = 2e-29 Identities = 549/847 (65%), Gaps = 28/847 (3%) Strand=Plus/Plus Query 551757 GAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGAT 551816 |||||||| ||||| || | ||||| ||||||| | ||| | ||||| || || Sbjct 69094 GAAGATGGCATCTTTGAAGTGAAATCTACTGCTGGAGATACCCATTTGGGTGGGGAGGAC 69153 Query 551817 TTTGATAATAGACTGGTAT--CATGGTGTGTTGAAGATTTTAAACGAAAAAACAAAGTTG 551874 ||||| ||| | |||| ||| |||| || || || || || || | || || Sbjct 69154 TTTGACAATCGCATGGTGAGCCATTTTGTG--GAGGAATTCAAGCGCAAGCATAAGCGTG 69211 Query 551875 ATCTATCTA-CATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAA 551933 | | || || | | | || |||| || || | || || || |||||||||||| Sbjct 69212 ACATTGCTGGCAACAAGCGA-GCAGTTCGACGGCTCCGCACAGCCTGTGAAAGAGCCAAA 69270 Query 551934 CGAGCTCT---TTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGA 551990 || | || ||| || || || | ||||||| | || ||||||||||| || Sbjct 69271 CGTACCCTGAGTTCCTCC---ACCCAGGCTTCTATTGAGATTGACTCATTATTTGATGGC 69327 Query 551991 ATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTT 552050 ||||||| | || | ||| | | || ||||| || | | |||||||||| Sbjct 69328 ATTGATTTCTACACATCAATTACTCGTGCTCGCTTTGAGGAGCTCAATGCTGATCTCTTC 69387 Query 552051 AGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAA-TCCAA 552109 | || ||||||| || || | | | | | ||| | ||| | || ||| ||| Sbjct 69388 CGTGGTACTCTTGAACCTGTGGAGAAGGCTCTTCGTGATGCTAAGCTAGACAAAGGACAA 69447 Query 552110 AGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTT 552169 | || |||||||||| || |||||||| || || | || || || || | ||| ||| Sbjct 69448 ATTA-ATGAAATTGTTCTGGTTGGTGGCTCAACTCGTATCCCCAAGAT---CCAAAAGTT 69503 Query 552170 -----AAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCT 552224 ||| ||| ||| ||||| ||| | |||| |||| | ||||| ||||| ||| Sbjct 69504 GCTCCAAG-ACTTCTTT-AATGGAAAAGAGCTAAACAAAAGCATAAATCCTGATGAAGCT 69561 Query 552225 GTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT--TTCTGGACAAACTGATGAAAAAC 552282 || || |||||||| || | || || |||||||| | |||||| ||||| Sbjct 69562 GTGGCATATGGTGCTGCTGTGCAGGCTGCTATTCTAATGGGTGACAAA--TCCGAAAATG 69619 Query 552283 TACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAG 552342 | ||| | || | || | ||||| | || || ||||| ||| | || || | ||| | Sbjct 69620 TGCAAGACCTTCTGCTGCTTGATGTAGCACCACTTTCTCTGGGTATTGAGACTGCTGGTG 69679 Query 552343 GTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTAT 552402 || | |||||| | ||| | | || || |||||||| || || | | | Sbjct 69680 GTGTGATGACTGCCTTAATCAAACGTAACACAACTATTCCCACCAAGCAAACCCAGACCT 69739 Query 552403 TTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAA 552462 | | || |||||||| || || | | ||| | ||| | | ||| || || ||| Sbjct 69740 TCACCACCTATTCAGACAACCAGAGTAGTGTGCTGGTACAAGTGTATGAGGGTGAGAGAG 69799 Query 552463 AATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTC 552522 | ||||| || ||||| | || || | ||| | | |||||||| ||||| | Sbjct 69800 CCATGACTAAGGACAATAACCTGCTGGGCAAGTTTGACCTGACGGGTATTCCACCTGCAC 69859 Query 552523 CTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATG 552582 ||||||| || || |||||||| || || || || || ||||| ||||| || | |||| Sbjct 69860 CTCGTGGTGTGCCCCAAATTGAGGTGACATTTGACATTGATGCAAATGGTATCCTCAATG 69919 Query 552583 TGACTGC 552589 | ||||| Sbjct 69920 TTACTGC 69926 >seq59098 Length=8879 Score = 132 bits (146), Expect = 4e-25 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 |||| |||||||||| || || ||||| |||||||| ||||| || || |||||||| | Sbjct 2005 TTACCAATGCAGTAATCACAGTCCCAGCTTATTTTAACGACTCTCAGCGGCAAGCTACCA 1946 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 |||||||||| |||||||| || ||||||||||| || ||||| ||||| || || | Sbjct 1945 AAGATGCTGGCACCATTGCTGGCCTGAATGTTCTTCGCATCATCAACGAACCCACCGCAG 1886 Query 550512 CTGCACTTGCATATGGACTTGATAAA 550537 | || |||| ||||| || |||||| Sbjct 1885 CAGCCATTGCGTATGGTCTGGATAAA 1860 >seq29087 Length=41947 Score = 91.5 bits (100), Expect = 1e-12 Identities = 158/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| |||||||| |||||||| ||||| ||| | ||| || ||||| || | || Sbjct 34842 CCTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCGGAGAGG 34785 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || || |||||||| || || || ||||||||||||||||| Sbjct 34784 GTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGAATG 34725 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||| ||||| || || || || || |||||| || ||| || | | || || Sbjct 34724 CCTTCCTTATCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTG-GGCTCCACCTC 34666 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| | || || || || || ||||| Sbjct 34665 CAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 34621 Score = 89.7 bits (98), Expect = 4e-12 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| |||||||| |||||||| ||||| ||| | ||| || ||||| || | || Sbjct 35070 CCTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCGGAGAGG 35013 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || ||||| || || || || || || ||||||||||||||||| Sbjct 35012 GTGCGGCCATCTTCCAGCTGTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGAGGAATG 34953 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||| ||||| || || || || || |||||| || ||| || | | || || Sbjct 34952 CCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTG-GGCTCCACCTC 34894 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| | || || || || || ||||| Sbjct 34893 CAGGGTGATGGTCTTYCCAGTCAAGGTCTTCACRAAGATCTGCAT 34849 Score = 87.8 bits (96), Expect = 1e-11 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || |||||||| |||||||| |||||| || || || ||||| || | || || Sbjct 35297 CTCAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTA 35238 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||| || ||||| || || || || || || ||||||||||||||||| ||| Sbjct 35237 CGGCCATCTTCCAGCTGTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCT 35178 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 || ||||| || || || || || |||||| || ||| || | | || || || Sbjct 35177 TCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTG-GGCTCCACCTCCAG 35119 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| | || || || || || ||||| Sbjct 35118 GGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCAT 35077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4019455884993320