Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq7215 143 3e-29 seq177 107 2e-18 seq49828 89.7 6e-13 >seq7215 Length=34700 Score = 143 bits (158), Expect = 3e-29 Identities = 109/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||||| |||| ||||||||||| || | ||| ||||| | ||||| ||| || Sbjct 16590 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCTTT 16649 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||||||||||| ||||||||| ||||||||||| || ||||||||||| ||||||||| Sbjct 16650 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 16709 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 16710 ACTACACGT 16718 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 36825 TTTTAAAAATCTTCATCTAACGTAAATT--TTATTTCCTTATTACTATTCATAACTCCCA 36882 ||||| |||||| |||| || || ||| |||| | | | ||| ||| || |||| Sbjct 14975 TTTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGC--AGGACTTGACATCACACCCA 15032 Query 36883 TTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATAT 36942 | ||||||||||||| || || |||| || || || || || ||||| || || |||| Sbjct 15033 TCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATAT 15092 Query 36943 TTTCCATAAAATCAAATGGATT 36964 | |||||||| ||||||||||| Sbjct 15093 TCTCCATAAAGTCAAATGGATT 15114 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 37430 TTCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 ||||| | ||| | |||||||||||||| ||||||||||||||||| || ||||| || Sbjct 18641 TTCTTTAGAATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 18700 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 || || || ||||| || ||||| ||||| | ||||| Sbjct 18701 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTC 18739 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 37430 TTCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 ||||| | ||| | |||||||||||||| ||||||||||||||||| || ||||| || Sbjct 22589 TTCTTTAGAATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 22648 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 || || || ||||| || ||||| ||||| | ||||| Sbjct 22649 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTC 22687 >seq177 Length=121252 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| || || || | ||||||||||| ||||| || | Sbjct 54724 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 54665 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||||||||| |||||||||| ||||| ||||| || ||||| || || ||||| | Sbjct 54664 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACG 54605 Query 37318 CTAC 37321 | || Sbjct 54604 CAAC 54601 >seq49828 Length=5021 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 37430 TTCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 ||||| | ||| | |||||||||||||| ||||||||||||||||| || ||||| || Sbjct 4648 TTCTTTAGAATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 4589 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 || || || ||||| || ||||| ||||| | ||||| Sbjct 4588 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTC 4550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590939159970720