Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2885 87.8 1e-12 seq1118 84.2 2e-11 >seq2885 Length=50683 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 112114 CTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAA 112173 || || ||||| || || |||| | | | ||| | ||| || || ||||||||||||||| Sbjct 45134 CTAAGTACTACATTAATTCTGTTTTTTAAAGGACGATTTTTCTCAGGGATGGAGAACCAA 45193 Query 112174 GTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||| ||||||||||| ||||| || ||||| ||| Sbjct 45194 GTCTTCCTACCCATTATGACCACATTTTGCTTTCCT 45229 >seq1118 Length=41628 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 |||| || ||||||| ||||| ||||| ||||||||||| || || | || || | || Sbjct 12947 TCATATCTTTGTACTCGGCTCCAAAATGTCTCCACTGGAAGCCATAAATAGGACCTAAGT 12888 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 |||| || || || || ||| ||||| || || | | ||||| ||||| | Sbjct 12887 CTCCTTCCTCTCTAGAGAAAAATCCCTGTTTGTCTAAGAATTGCCGAGAACCATTGGCAT 12828 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||| ||||| || ||||| | || |||||||| | ||||| || || Sbjct 12827 CCCAAATCTTAACTCCCTTAGCAGAAAGCTCTTTTGCATTTGTAGAACC 12779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407690976336164