Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq19239 138 2e-27 seq13148 123 5e-23 seq10737 116 7e-21 seq162283 114 2e-20 seq141878 114 2e-20 seq5264 96.9 6e-15 >seq19239 Length=12841 Score = 138 bits (152), Expect = 2e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||| ||||| | | || ||| || || | ||| || || || || |||||||| | Sbjct 8973 GCTGGCAGCCGTTGTTCACGTGATTCATTACTTTCTGCTTCAGCTGCGCTACCTGGTCTC 9032 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 | || || || || || |||||||| ||||| || ||| | |||||| || | Sbjct 9033 GGAGCGCGCTGGCAGTGTTAGACAGTCCCGCGTTCTCGTTCTTTAAGCTCTTCACCTTGT 9092 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 |||||||||| |||||||| ||||| || | | | |||||||||||| |||| ||||| Sbjct 9093 CCTCCAGCCGAGCGATGCGCTCCAGCTTCCTCTTCCTGCATTTGGTGGCGGCCAGGCGGT 9152 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 | || || | ||| | ||| |||||||||| ||||| || ||||||| || |||||| Sbjct 9153 TGCGCAGCCGCTTCCTCTCCACCTTGATGCGCTCCTGATCTTCCATGTTAATGGGAGAC 9211 >seq13148 Length=25989 Score = 123 bits (136), Expect = 5e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || || | ||| ||||| || |||||||| ||||| || | | || || || |||| Sbjct 17602 AGCACTTTCTGCTTGAGCTGCGCCACCTGCTCCCGGAGGAGGTTGGCCGTGGAGGCCAGT 17543 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | | |||||| ||| ||||| || ||||| || | |||||| ||||| Sbjct 17542 TCGGTGTTCTGGGTCTTGAGGCTCTTGACTTTTTCTTCCAGGCGGGAGATGCGCTCCAGC 17483 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || ||||| || || |||| ||| || | |||||| || || | ||| || || |||||| Sbjct 17482 TTCCGCCGCCGACACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCGGCCTTG 17423 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 17422 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 17390 >seq10737 Length=39522 Score = 116 bits (128), Expect = 7e-21 Identities = 117/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 213818 CTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTC 213877 || |||||| |||||||||| ||| |||||| ||| ||||||| | |||| ||| || Sbjct 18994 CTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGTGCCCTCTGCTCTTC 18935 Query 213878 CACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCAT 213937 | || | ||| || |||||| || || |||||||||||| |||||| ||||||| Sbjct 18934 CTTCCCGGTGTTCTTCTTCAGATCGAGGAATTCAAAGATGTCCATGTGCCAGGGCTCCAG 18875 Query 213938 GTAGATGGCAAAGGCGCCCGGCCTCTTGCCG 213968 ||||||||| ||||| || || ||| ||||| Sbjct 18874 GTAGATGGCGAAGGCCCCGGGTCTC-TGCCG 18845 Score = 102 bits (112), Expect = 2e-16 Identities = 108/137 (79%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 212690 ATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTAT 212749 ||| | |||||| ||||| |||||||| ||||| | ||| |||||||||||| | | Sbjct 26585 ATGGATGTTCAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCAGCGGCCATCTTCAG 26526 Query 212750 GATA-TCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGA 212808 ||| ||| ||||||||| ||||||||| |||||| ||| | || |||||||| |||| Sbjct 26525 GATGGTCT-TCTGGGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAGGTCCTC-GGGA 26468 Query 212809 AGC-CGGGGATGTTCTG 212824 | | | ||||||||||| Sbjct 26467 ATCTCCGGGATGTTCTG 26451 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/121 (78%), Gaps = 3/121 (2%) Strand=Plus/Minus Query 212690 ATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTAT 212749 ||| | |||||| ||||| |||||||| ||||| | ||| |||||||||||| | | Sbjct 26776 ATGGATGTTCAGAGACTGGCTCTGGTCGATGAAGGCCCCCCGGTCAGCGGCCATCTTCAG 26717 Query 212750 GA-TATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGA 212808 || ||| ||||||||| ||||||||| |||||| ||| | || |||||||| |||| Sbjct 26716 GACGGTCT-TCTGGGAGATCTCCCACACCGTCTTGTAGAGCTGCTTCAGGTCCTC-GGGA 26659 Query 212809 A 212809 | Sbjct 26658 A 26658 >seq162283 Length=690 Score = 114 bits (126), Expect = 2e-20 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 213530 GTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTT 213589 |||||||| |||||||||||| ||||||||||| |||||||||||||||||| ||||| Sbjct 631 GTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTT 572 Query 213590 TGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 ||| |||| || |||||||||||||||||||| | ||| ||||| Sbjct 571 GCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 521 >seq141878 Length=967 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||| || ||||||||||||| | ||| | ||| ||||||||||| | Sbjct 812 CTGGAACTCCCCTGAGAGCACCCGGCGGGTGTAGATGTTGCTGGTGTAGGGCTCCACCGA 871 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 |||||||||||||||||||| || ||| ||| ||||||||||| ||||||||||| || Sbjct 872 TTCGTTGTTCCCCAGAATCTGAGCCGTGGAGGCCGTGGGCATGGGGGCCACCAGGAGGCT 931 Query 213038 GTTCCTCACTCCGTGC 213053 |||||| || |||||| Sbjct 932 GTTCCTGACCCCGTGC 947 >seq5264 Length=69195 Score = 96.9 bits (106), Expect = 6e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549 |||||| | || ||||||||||||| || |||||||| || || |||||||||||||| Sbjct 36072 TTGAGCGCTTTGACTTTCTCCTCCAAGCGGGCGATGCGCTCTAGCTTGCGCCGGCGGCAC 36013 Query 241550 TTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCC 241609 |||| || || | ||||| || ||||| || || ||||| || | ||| || ||| | Sbjct 36012 TTGGAAGCGGCGATACGGTTGCGCAGTCTTTTGCGCTCCGCTTTCAGGCGCTCTTGGCTC 35953 Query 241610 TCC 241612 ||| Sbjct 35952 TCC 35950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929366194437120