Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq10737 114 2e-20 seq162283 100 5e-16 seq177 84.2 4e-11 >seq10737 Length=39522 Score = 114 bits (126), Expect = 2e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 222032 ACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGC 222091 |||| || ||||||||||||||||||||| ||||| | ||||| || | | || |||| Sbjct 18999 ACCCGCTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGTGCCCTCTGC 18940 Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151 || ||| ||| |||| ||| ||||||| | || ||||| ||||| |||||| ||| Sbjct 18939 TCTTCCTTCCCGGTGTTCTTCTTCAGATCGAGGAATTCAAAGATGTCCATGTGCCAGGGC 18880 Query 222152 TCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||| |||| ||| | || ||||||| || Sbjct 18879 TCCAGGTAGATGGCGAAGGCCCCGGGTCTCT 18849 >seq162283 Length=690 Score = 100 bits (110), Expect = 5e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 |||||||||||| | ||| |||| | |||||| || |||||||||||||||||||||| Sbjct 650 CCACCTCGTCCTGGCTGGAGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGG 591 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||||| | || || ||| || ||| | ||||||||||||||| |||| Sbjct 590 TGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCG 531 Query 221850 CGCCAGTCTCCAGCTGAG 221867 || |||||| ||||| Sbjct 530 TCCCCGTCTCCGTCTGAG 513 >seq177 Length=121252 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| || ||||||||||| || || ||||| ||| ||| | ||||| ||||| || | Sbjct 54599 TGGTTGCGTTTGCTGCTGTCGAAGGAATCTTCTTCTCTGGTGCTTTTGCAGCCATATTTT 54658 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||||||| ||| ||| ||||| || || |||||| ||||| || || || ||||| Sbjct 54659 GGCTCAAGAAGAGAGGGTTAATGCCAGGCCT-TACTTTCTCCAATGAACTTATTAGCAGA 54717 Query 26002 GACGA 26006 || || Sbjct 54718 GATGA 54722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926684446321920