Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq589 203 2e-46 seq21484 109 4e-18 seq97270 105 4e-17 seq96998 105 4e-17 seq33583 105 4e-17 seq23496 105 4e-17 seq3105 87.8 1e-11 >seq589 Length=133378 Score = 203 bits (224), Expect = 2e-46 Identities = 536/813 (66%), Gaps = 14/813 (2%) Strand=Plus/Plus Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGTAT--CATGGT 475424 || ||||||||| | ||| | ||||| || || ||||| ||| | | || ||| | Sbjct 69121 ACTGCTGGAGATACCCATTTGGGTGGGGAGGACTTTGACAATCGCATGGTGAGCCATTTT 69180 Query 475425 GTGTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTC----AACATCTGCTAAAGCA 475480 ||| || || |||||| | || |||| ||| || | |||| | |||| Sbjct 69181 GTG--GAGGAATTCAAGCGCAAGCATAAGCGTGACATTGCTGGCAACAAGCG----AGCA 69234 Query 475481 TTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAA 475540 | |||| || | || || |||||| | || || || | || ||| | || || Sbjct 69235 GTTCGACGGCTCCGCACAGCCTGTGAAAGAGCCAAACGTACCCTGAGTTCCTCCACCCAG 69294 Query 475541 ACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGG 475600 || || |||| |||| || | ||||| || ||||||| | || ||||| | Sbjct 69295 GCTTCTATTGAGATTGACTCATTATTTGATGGCATTGATTTCTACACATCAATTACTCGT 69354 Query 475601 GCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAA 475660 ||| ||||| || | | |||||||||| | || ||||||| || || | Sbjct 69355 GCTCGCTTTGAGGAGCTCAATGCTGATCTCTTCCGTGGTACTCTTGAACCTGTGGAGAAG 69414 Query 475661 GTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGT 475720 | ||| | ||| |||| || |||||| |||| | ||||||||||||| || || || Sbjct 69415 GCTCTTCGTGATGCTAAGCTAGACAAAGGACAAATTAATGAAATTGTTCTGGTTGGTGGC 69474 Query 475721 TCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTA 475780 ||||| | || || || || | | |||| | | |||||||| ||| || || Sbjct 69475 TCAACTCGTATCCCCAAGATCCAAAAGTTGCTCCAAGACTTCTTTAATGGAAAAGAGCTA 69534 Query 475781 AATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATT 475840 || |||| ||||||||||||||||||| |||||||| |||||||| || || |||||| Sbjct 69535 AACAAAAGCATAAATCCTGATGAAGCTGTGGCATATGGTGCTGCTGTGCAGGCTGCTATT 69594 Query 475841 TTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTT 475900 || ||| | | ||| || | | | || | || |||| ||| | |||||| Sbjct 69595 CTAATGGGTGACAAATCCGAAAATGTGCAAGACCTTCTGCTGCTTGATGTAGCACCACTT 69654 Query 475901 TCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACA-GAAATACTCC 475959 || | ||| |||| || | ||| || | |||||| |||| | | | | || || | Sbjct 69655 TCTCTGGGTATTGAGACTGCTGGTGGTGTGATGACTGC-CTTAATCAAACGTAACACAAC 69713 Query 475960 TATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 ||| || ||| || | | || |||| ||||| || || || | | ||| Sbjct 69714 TATTCCCACCAAGCAAACCCAGACCTTCACCACCTATTCAGACAACCAGAGTAGTGTGCT 69773 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTT 476079 | ||| | | ||| ||||| ||| | ||||| || |||||| || || | || Sbjct 69774 GGTACAAGTGTATGAGGGTGAGAGAGCCATGACTAAGGACAATAACCTGCTGGGCAAGTT 69833 Query 476080 TAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGA 476139 | | || |||||||| ||||| || | || || || |||||||| || || ||||| Sbjct 69834 TGACCTGACGGGTATTCCACCTGCACCTCGTGGTGTGCCCCAAATTGAGGTGACATTTGA 69893 Query 476140 TATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 ||||||||||||||||| || ||||||||||| Sbjct 69894 CATTGATGCAAATGGTATCCTCAATGTTACTGC 69926 Score = 197 bits (218), Expect = 9e-45 Identities = 380/553 (69%), Gaps = 8/553 (1%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| || || ||||| || || || || ||| || || | |||| || | || || Sbjct 68466 TGCCATAGGCATTGACTTGGGCACCACATACTCCTGCGTCGGAGTTTTCCAGCACGGGAA 68525 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| || || || ||||| |||||||| || | || ||||| |||||| | ||||| Sbjct 68526 AGTGGAGATTATCGCCAACGACCAAGGCAACCGCACTACACCGAGCTATGTTGCCTTTAC 68585 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || ||||||| || || |||||||| || || |||||| || ||||| || Sbjct 68586 GGACACTGAACGCCTCATCGGAGATGCAGCCAAGAATCAAGTGGCTATGAATCCCAACAA 68645 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || || |||||||| || | | ||||| || || |||||||| | || || || || Sbjct 68646 CACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAATTTGATGACTCTACGGTGCAGTC 68705 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 |||||| || |||||||| ||| | | || | ||| || || | || ||| Sbjct 68706 CGATATGAAGCACTGGCCTTTCCGTGTGGTGAGTGAAGCTGGGAAGCCCAAGGTACAAGT 68765 Query 474628 --AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | || | | |||| | || || | || ||| ||||||| || ||||| || Sbjct 68766 CGAGTATAAGT--GTGAGATCAAGACCTTCTTTCCTGAAGAAATTTCCTCTATGGTATTG 68823 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGA-TGCAGTAA 474743 |||||||||| ||| || ||| | || || || |||| | || ||| |||| Sbjct 68824 ACCAAAATGAAGGAAATAGCTGAGG-CTTACCTGGGTTGCAAAGTC-CAGAGTGCTGTAA 68881 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 ||||||| || ||||| || ||||| || ||||| ||||| || |||||||| || | | Sbjct 68882 TTACTGTACCTGCATACTTCAATGACTCCCAACGCCAAGCCACCAAAGATGCCGGTACCA 68941 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 || ||||||| ||||| || || || |||||||| || || || || || |||| |||| Sbjct 68942 TTACAGGTCTCAATGTATTGCGCATCATTAATGAGCCCACGGCTGCTGCCATTGCCTATG 69001 Query 474864 GTCTTGATAAGAA 474876 || | ||||| || Sbjct 69002 GTTTGGATAAAAA 69014 >seq21484 Length=40370 Score = 109 bits (120), Expect = 4e-18 Identities = 106/135 (79%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | || || ||||| ||||| ||||| || || ||||| || || ||||||| Sbjct 39015 ATGCCGTGGTCACAGTCCCAGCTTATTTCAATGACTCCCAGCGTCAGGCTACAAAAGATG 38956 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| ||||| ||||| | || ||||||||||| ||||| ||||| ||| Sbjct 38955 CCGGAACCATTGCTGGTCTCAATGTGCTCCGAATTATTAATGAGCCAACCGCAGCTGCAA 38896 Query 474855 TTGCTTATGGTCTTG 474869 ||||||| || |||| Sbjct 38895 TTGCTTACGG-CTTG 38882 Score = 89.7 bits (98), Expect = 3e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 ||||| || ||| | | || || || || ||| || || | ||| | || ||| Sbjct 37231 GAAGGAGAGAGAGCAATGACCAAGGACAACAACTTGCTGGGCAAGTTTGAACTGACAGGC 37172 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 |||||||| ||||| || || || || || |||||||| || || ||||||||||| ||| Sbjct 37171 ATTCCTCCAGCTCCAAGGGGTGTGCCCCAGATTGAAGTCACCTTCGATATTGATGCCAAT 37112 Query 476153 GGTATTCTTAATGTTACTGCTTGTGATAA 476181 || || || |||||| ||||| |||||| Sbjct 37111 GGCATCCTCAATGTTTCTGCTGTTGATAA 37083 >seq97270 Length=1937 Score = 105 bits (116), Expect = 4e-17 Identities = 139/193 (72%), Gaps = 11/193 (6%) Strand=Plus/Plus Query 80359 AAGTATCATAGAATTTGATATATATCCAAAATTATCATATTGTTTAGCAGCACAAGATAA 80418 ||||| ||||||||| | | | |||| | || | |||||| |||||| | ||||| Sbjct 1261 AAGTAGCATAGAATTAGTGACTTGTCCATACAATTCCTGTTGTTTTGCAGCATAGGATAA 1320 Query 80419 ATTTATCAAATTCCAAGCTATAATACCCGGTCTTCCATTAAAAAATAATTTTAAATCA-- 80476 ||| |||||| |||| ||| ||| || |||| ||||||||||| ||||| |||||| Sbjct 1321 ATTAATCAAAGTCCATCCTACAATTCCAGGTCGGCCATTAAAAAACAATTTGAAATCAAA 1380 Query 80477 -----GTTCCAAGAATTTGTGGATTAAATTCAATTCCCATTACAATATCATaaaaaaaTT 80531 | ||||| |||||||||||||||||||||| | | | ||| || || | Sbjct 1381 CCACTTTCCCAAG----CGTGGATTAAATTCAATTCCCATCATGAAGTTATAGAAGAAAT 1436 Query 80532 TACCAGTACATTT 80544 | ||||| |||| Sbjct 1437 TGCCAGTGAATTT 1449 >seq96998 Length=1944 Score = 105 bits (116), Expect = 4e-17 Identities = 139/193 (72%), Gaps = 11/193 (6%) Strand=Plus/Plus Query 80359 AAGTATCATAGAATTTGATATATATCCAAAATTATCATATTGTTTAGCAGCACAAGATAA 80418 ||||| ||||||||| | | | |||| | || | |||||| |||||| | ||||| Sbjct 1268 AAGTAGCATAGAATTAGTGACTTGTCCATACAATTCCTGTTGTTTTGCAGCATAGGATAA 1327 Query 80419 ATTTATCAAATTCCAAGCTATAATACCCGGTCTTCCATTAAAAAATAATTTTAAATCA-- 80476 ||| |||||| |||| ||| ||| || |||| ||||||||||| ||||| |||||| Sbjct 1328 ATTAATCAAAGTCCATCCTACAATTCCAGGTCGGCCATTAAAAAACAATTTGAAATCAAA 1387 Query 80477 -----GTTCCAAGAATTTGTGGATTAAATTCAATTCCCATTACAATATCATaaaaaaaTT 80531 | ||||| |||||||||||||||||||||| | | | ||| || || | Sbjct 1388 CCACTTTCCCAAG----CGTGGATTAAATTCAATTCCCATCATGAAGTTATAGAAGAAAT 1443 Query 80532 TACCAGTACATTT 80544 | ||||| |||| Sbjct 1444 TGCCAGTGAATTT 1456 >seq33583 Length=7974 Score = 105 bits (116), Expect = 4e-17 Identities = 139/193 (72%), Gaps = 11/193 (6%) Strand=Plus/Plus Query 80359 AAGTATCATAGAATTTGATATATATCCAAAATTATCATATTGTTTAGCAGCACAAGATAA 80418 ||||| ||||||||| | | | |||| | || | |||||| |||||| | ||||| Sbjct 57 AAGTAGCATAGAATTAGTGACTTGTCCATACAATTCCTGTTGTTTTGCAGCATAGGATAA 116 Query 80419 ATTTATCAAATTCCAAGCTATAATACCCGGTCTTCCATTAAAAAATAATTTTAAATCA-- 80476 ||| |||||| |||| ||| ||| || |||| ||||||||||| ||||| |||||| Sbjct 117 ATTAATCAAAGTCCATCCTACAATTCCAGGTCGGCCATTAAAAAACAATTTGAAATCAAA 176 Query 80477 -----GTTCCAAGAATTTGTGGATTAAATTCAATTCCCATTACAATATCATaaaaaaaTT 80531 | ||||| |||||||||||||||||||||| | | | ||| || || | Sbjct 177 CCACTTTCCCAAG----CGTGGATTAAATTCAATTCCCATCATGAAGTTATAGAAGAAAT 232 Query 80532 TACCAGTACATTT 80544 | ||||| |||| Sbjct 233 TGCCAGTGAATTT 245 >seq23496 Length=19324 Score = 105 bits (116), Expect = 4e-17 Identities = 139/193 (72%), Gaps = 11/193 (6%) Strand=Plus/Plus Query 80359 AAGTATCATAGAATTTGATATATATCCAAAATTATCATATTGTTTAGCAGCACAAGATAA 80418 ||||| ||||||||| | | | |||| | || | |||||| |||||| | ||||| Sbjct 16132 AAGTAGCATAGAATTAGTGACTTGTCCATACAATTCCTGTTGTTTTGCAGCATAGGATAA 16191 Query 80419 ATTTATCAAATTCCAAGCTATAATACCCGGTCTTCCATTAAAAAATAATTTTAAATCA-- 80476 ||| |||||| |||| ||| ||| || |||| ||||||||||| ||||| |||||| Sbjct 16192 ATTAATCAAAGTCCATCCTACAATTCCAGGTCGGCCATTAAAAAACAATTTGAAATCAAA 16251 Query 80477 -----GTTCCAAGAATTTGTGGATTAAATTCAATTCCCATTACAATATCATaaaaaaaTT 80531 | ||||| |||||||||||||||||||||| | | | ||| || || | Sbjct 16252 CCACTTTCCCAAG----CGTGGATTAAATTCAATTCCCATCATGAAGTTATAGAAGAAAT 16307 Query 80532 TACCAGTACATTT 80544 | ||||| |||| Sbjct 16308 TGCCAGTGAATTT 16320 >seq3105 Length=109664 Score = 87.8 bits (96), Expect = 1e-11 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 299107 TGCTTCTGAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGA 299166 ||| |||||| ||||||||||||| | | | ||| |||| |||||||||||||| || Sbjct 74727 TGCATCTGAACGCCAGATTAAAAAAGCATTTCATAAACTAGCAATGAAATATCATCCAGA 74668 Query 299167 CAGAAATAAAAGTCCTGAAGCGGAAGAAAAGTT 299199 || ||||||||| |||| ||| |||| ||| || Sbjct 74667 CAAAAATAAAAGCCCTGGAGCAGAAGCAAAATT 74635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3260197840678064