Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq18652 206 3e-48 >seq18652 Length=13112 Score = 206 bits (228), Expect = 3e-48 Identities = 646/994 (65%), Gaps = 15/994 (2%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||| ||| | |||||| |||| ||| || | || || ||||| || || || | Sbjct 3632 TGTCTCGTAAATGTTCTTCCAAACACTGAATTGCAAAAGGATCAACATCAGTATCAAACT 3573 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || | ||| || ||| ||| |||||| || ||||||| || || | Sbjct 3572 TGTTGGCAAAGAAATGATGT---TTCCGTAACATCCAGCTCAAGTCTCCGACTCCAAAAA 3516 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | || || ||||| | ||| || || |||||||| ||||| |||| || || | || | Sbjct 3515 CACATACAGAACGGACGTGAACTCCATTGCAAGGAGGGTAAGGAGCACCCTTGGATACAT 3456 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || || |||| |||||||||||||||| ||| | || | ||| ||||| || | Sbjct 3455 CCCCCTCAAAGTAGTGCCACTTCACAAACCGGGCAACTGCATTCATATCGGAAACATCAT 3396 Query 160285 ATTTGTACATCAGGGGA-ACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 ||||| || | ||| |||||||| ||||| | || || ||||| | || ||||| Sbjct 3395 ATTTG-CCACTGGCGGAGACGGCACCAGGAACCTCAGGGATTCGCTGAATTGTTGCCCAT 3337 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 | || ||| || || ||||| ||||| |||| |||||| || || | ||| || Sbjct 3336 AAGTATTCATCAGGACTGTATGTGTCTTTAGCCCATTCTATAAAAGCAAGAATTTTGCTA 3277 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | | | | || | || | || ||||| || || || || ||||| Sbjct 3276 TTCTCTAATATATATTCCACAAACCTCCTACTAACAACAAAATAGGCACTTCCAGAGAAA 3217 Query 160464 ATCGGTATGGGTATAGGCGGCGTG-TCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 || ||| || | ||| || ||| | |||||| || ||||| | | || | Sbjct 3216 ATGGGTGTGTTGAGAGGTGG-GTGCTGTTTGTCTATCCCTGTGTTTTTTATCTTGCCATC 3158 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTC 160582 | | |||| | ||||||||||| ||| |||| | ||||| |||||| || Sbjct 3157 AATTACTTCGTGATGTTTCTTCCACCTCACCTCTTTGTTTGAAGGCATTTTTTCCGTTTC 3098 Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642 || || || |||||| ||| | ||||| | || || || ||| | || ||||||| Sbjct 3097 TAAGCTATTTTCACCGTTGAGGGCTTTCAATTTCTCCACTATTTCTTGATTGGTCTTGAT 3038 Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702 || || || ||||||| | || || | ||||||||| || | || | || Sbjct 3037 TGGGAAATCCATACCGCAGAGATTGATTAAGTACTTCCAGCTCACATTCCTCCTATAGAG 2978 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 ||| ||||||| || | || || || || |||||||| || || |||||||| | || Sbjct 2977 ATCCTTCATGCAGTTGAGGTCAGCTTGTACCCGGCTCCATGATGCATACACTACACTTTC 2918 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCG----CCA 160818 | || ||||| | ||||| |||| ||||| || | || ||| || | | | Sbjct 2917 CAATTGGCTGGCAATGAAGACATTATGAAAACATGATGCAATCCCCTTTACAGATGCCAA 2858 Query 160819 GAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGT 160878 |||||| || | |||| ||| || || | ||| || ||||||||| || | Sbjct 2857 GAAAGA----CTCTGGGGACTTTTTGTCAACATGAATGCAGTAATAGTTCTGAGGAGCAT 2802 Query 160879 AGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGG 160938 | |||| || || | ||||| | ||| | || ||||||| ||| || || || | Sbjct 2801 ATATGGTTCTCAGAAGTCTCTCAAGCATATTAATTTTATGATAAGCCACTATTGAATATG 2742 Query 160939 CTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGA 160998 | || ||||| || | || || | || || | | | | || || ||| |||| | Sbjct 2741 CAATGGGAAATTCTGCTTCTTCTTGGCTAAGAGGTTCCATAATATATTTCCGCTTCTTAA 2682 Query 160999 TAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 |||| | | ||||| |||||||||||||| Sbjct 2681 TAAAGGAGGCGCAATCAATTGTCATGTTGATATA 2648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575876674723680