Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq589 558 5e-154 seq29087 185 1e-41 seq59098 152 7e-32 seq174935 125 9e-24 seq21484 102 1e-16 seq47242 89.7 7e-13 >seq589 Length=133378 Score = 558 bits (618), Expect = 5e-154 Identities = 1051/1536 (68%), Gaps = 31/1536 (2%) Strand=Plus/Plus Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||||||| | || |||||||| ||||| || || || || ||||||||||| Sbjct 68527 GTGGAGATTATCGCCAACGACCAAGGCAACCGCACTACACCGAGCTATGTTGCCTTTACG 68586 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | |||||| ||| | |||||||| || || ||||| |||||||| || | ||| Sbjct 68587 GACACTGAACGCCTCATCGGAGATGCAGCCAAGAATCAAGTGGCTATGAATCCCAACAAC 68646 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||| || |||||||| ||||| ||||| ||| || | || || | Sbjct 68647 ACCATCTTTGATGCCAAGCGTCTCATTGGCCGCAAATTTGATGACTCTACGGTGCAGTCC 68706 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 ||||| ||| ||||| ||| || || ||| |||| ||||| | | | | Sbjct 68707 GATATGAAGCACTGGCCTTTCCGTGTGGTGA---GTGAAGCTGGGAAGCCCAAGGTACAA 68763 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658 || || | | | |||||| || || ||| ||||||||||| |||||||| ||| Sbjct 68764 GTCGAGTATAAGTGTGAGATCAAGACCTTCTTTCCTGAAGAAATTTCCTCTATGGTATTG 68823 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 | || |||||||| | || || ||| | ||||| | || | ||| || | Sbjct 68824 ACCAAAATGAAGGAAATAGCTGAGGCTTACCTGGGTTGCAAAGTCCAGAGTGCTGTAATT 68883 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||||||||| ||||||| ||| || ||||| || || || || || || | | | ||| Sbjct 68884 ACTGTACCTGCATACTTCAATGACTCCCAACGCCAAGCCACCAAAGATGCCGGTACCATT 68943 Query 195779 GCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 | ||||| || ||| || | || || ||||| || || || ||||| ||||| ||||| Sbjct 68944 ACAGGTCTCAA-TGTATTGCGCATCATTAATGAGCCCACGGCTGCTGCCATTGCCTATGG 69002 Query 195838 TCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGG 195891 | |||| || || || | | || || ||||| |||||||||| | ||||| Sbjct 69003 TTTGGATAAAAAAGGGAGCAGAGCAGGTGAGAAGAATGTGCTGATCTTTGACTTGGGTGG 69062 Query 195892 TGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTAC 195951 ||| || |||||||| || || | | |||||||| ||| || || ||||| || |||| Sbjct 69063 TGGCACATTTGATGTTTCCATTTTGACTATTGAAGATGGCATCTTTGAAGTGAAATCTAC 69122 Query 195952 TGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTC 196011 |||||| ||||| ||| | ||||| || || || || || | | | ||||| Sbjct 69123 TGCTGGAGATACCCATTTGGGTGGGGAGGACTTTGACAATCGCATGGTGAGCCATTTTGT 69182 Query 196012 TGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCG 196071 || || ||| || ||| ||||| || ||| |||| || | || |||| || Sbjct 69183 GGAGGAATTCAAGCGCAAGCATAAGCGTGACATTGCTGGCAACAAGCGAGCAGTTCGACG 69242 Query 196072 GCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGT 196131 ||| | || || |||||| | |||||||| || || ||| | | || | | Sbjct 69243 GCTCCGCACAGCCTGTGAAAGAGCCAAACGTACCCTGAGTTCCTCCACCCAGGCTTCTAT 69302 Query 196132 TGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTT 196191 ||||||||| || || ||||| || ||||| ||||| ||| | ||||| ||||| || || Sbjct 69303 TGAGATTGACTCATTATTTGATGGCATTGATTTCTACACATCAATTACTCGTGCTCGCTT 69362 Query 196192 TGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCG 196251 ||| ||| | || ||||| | || | | | |||||||| || | | ||||| Sbjct 69363 TGAGGAGCTCAATGCTGATCTCTTCCGTGGTACTCTTGAACCTGTGGAGAAGGCTCTTCG 69422 Query 196252 TGACGCAAAGATGGATAA--GTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACC 196309 ||| || ||| | || || | | || || |||||||||| || || || || ||||| Sbjct 69423 TGATGCTAAGCTAGACAAAGGACAAA--TTAATGAAATTGTTCTGGTTGGTGGCTCAACT 69480 Query 196310 CGTATTCCGAAGATTCAACAGATGCTTTCTAG-CTTCTTCAATAATAAAGATTTAAACAA 196368 ||||| || ||||| ||| || |||| | || |||||| ||| ||||| ||||||| Sbjct 69481 CGTATCCCCAAGATCCAAAAGTTGCTC-CAAGACTTCTTTAATGGAAAAGAGCTAAACAA 69539 Query 196369 AACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTC 196428 || || || || |||||||| || || |||||||| || || |||||||||||||| Sbjct 69540 AAGCATAAATCCTGATGAAGCTGTGGCATATGGTGCTGCTGTGCAGGCTGCTATTCT--- 69596 Query 196429 AGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATC 196485 | | |||||| | || || ||||| |||||||| |||||||| ||||| | || Sbjct 69597 AATGGGTGACAAATCCGAAAATGTGCAAGACCTTCTGCTGCTTGATGTAGCACCACTTTC 69656 Query 196486 CCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTAT 196545 |||||| |||| || || |||||||| |||||| | || | | ||||||||||| Sbjct 69657 TCTGGGTATTGAGACTGCTGGTGGTGTGATGACTGCCTTAATCAAACGTAACACAACTAT 69716 Query 196546 TCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAG----GTGTTC 196601 ||| || ||| | || ||| | || ||||| || ||||||| |||| | Sbjct 69717 TCCCACCAAGCAAACCCAGACCTTCACCACCTATTCAGA----CAACCAGAGTAGTGTGC 69772 Query 196602 ATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTT 196661 | ||||| ||||| || || | || | ||||| || | || || || | | Sbjct 69773 TGGTACAAGTGTATGAGGGTGAGAGAGCCATGACTAAGGACAATAACCTGCTGGGCAAGT 69832 Query 196662 TCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCG 196721 | || ||||||| |||||| ||||||| | ||||| || || ||| | || || | Sbjct 69833 TTGACCTGACGGGTATTCCACCTGCACCTCGTGGTGTGCCCCAAATTGAGGTGACATTTG 69892 Query 196722 ATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTG 196781 | || || |||||||| || || || || || || | ||||||| | || ||| Sbjct 69893 ACATTGATGCAAATGGTATCCTCAATGTTACTGCAGTGGACAAGAGCACAGGAAAAGAGA 69952 Query 196782 AAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGG 196841 | |||||| || || |||||||| ||||| || || || || ||||| || |||| Sbjct 69953 ATAAGATTACAATAACTAATGACAAAGGGCGCCTCAGCAAAGATGACATTGACCGCATGG 70012 Query 196842 TTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 | ||||| || || |||| || ||| || |||| Sbjct 70013 TGCAAGAAGCAGAGCGTTACAAGGCAGAGGATGAGG 70048 >seq29087 Length=41947 Score = 185 bits (204), Expect = 1e-41 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||| | ||||| || || |||||||| ||||| ||| | Sbjct 35077 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 35136 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| |||||||| || ||||||||||||||||| || |||||| Sbjct 35137 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 35196 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || || || || |||||||| |||||||| ||||||||| | || |||||| Sbjct 35197 CAGAGGCTGATCTTCGCGGGCAAACAGCTGGAAGATGGCCGTACCCTCTCCGACTACAAC 35256 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||||||||| || || ||||| || Sbjct 35257 ATCCAGAAGGAGTCTACCCTCCATCTTGTCCT 35288 Score = 183 bits (202), Expect = 4e-41 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||| | ||||| || || |||||||| ||||| ||| | Sbjct 34849 ATGCAGATCTTYGTGAAGACCTTGACTGGRAAGACCATCACCCTGGAGGTGGAGCCCAGT 34908 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| |||||||| || ||||||||||||||||| || |||||| Sbjct 34909 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 34968 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || || || || |||||||| |||||||| || |||||| | || |||||| Sbjct 34969 CAGAGGCTGATCTTCGCGGGCAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 35028 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || || || ||||| || | || ||||||| Sbjct 35029 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTGAGGGGTGG 35075 Score = 176 bits (194), Expect = 6e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||| | ||||| || || |||||||| ||||| ||| | Sbjct 34621 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 34680 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| || ||||| || ||||||||||||||||| || |||||| Sbjct 34681 GACACCATTGAGAATGTCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 34740 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || ||||| || || ||||| |||||||| || |||||| | || |||||| Sbjct 34741 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 34800 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || || || ||||| || | || ||||||| Sbjct 34801 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTGAGGGGTGG 34847 >seq59098 Length=8879 Score = 152 bits (168), Expect = 7e-32 Identities = 366/547 (67%), Gaps = 14/547 (3%) Strand=Plus/Minus Query 195865 AAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGA 195924 |||||| | || ||||| || |||||||| || |||||||| || |||| | ||||| Sbjct 1155 AAATGTCCTTATTTTTGACCTGGGTGGTGGCACCTTTGATGTGTCCATTCTGACGATTGA 1096 Query 195925 AGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTT 195984 | ||| || || ||||| || | || ||||| || ||||| || ||||| || ||||| Sbjct 1095 GGATGGCATCTTTGAAGTGAAATCGACAGCTGGAGACACTCACCTGGGTGGCGAGGATTT 1036 Query 195985 CGATGCACGTCTTCTCCGTCA-TTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATA 196043 || || | | || ||||| | || ||| || ||| ||||||| || | Sbjct 1035 TGACAATCGCATGGTGAACCACTTTGTGTCG-GAATTCAAGCGCAAGCATAAGAAGGACA 977 Query 196044 TTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAA 196103 | | | ||| |||| | || ||||| | || || || || || ||||| || | Sbjct 976 TCACGGACAATAAGCGGGCCGTCCGGCGGCTGCGCACAGCTTGCGAGCGGGCCAAGCGCA 917 Query 196104 CTCTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACT 196163 | ||| || | | || | |||| ||||| || | | ||| || ||||||| Sbjct 916 CCCTCAGCTCCTCCACCCAGGCTTCCATTGAAATTGACTCCCTCTATGAGGGCATTGACT 857 Query 196164 TCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGT 196223 |||| || | || ||||| || || ||||||||| | || |||| | || || Sbjct 856 TCTACACCTCCATCACCCGGGCTCGCTTTGAAGAGCTGAATGCTGACCTCTTCCGGG--- 800 Query 196224 GTA---TGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTG 196280 ||| |||| || || || | | | || || || ||| |||| ||| | |||| Sbjct 799 GTACCCTGGAGCCGGTGGAGAAGGCTTTGCGGGATGCCAAGTTGGACAAGGCCCAGGTCC 740 Query 196281 ATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTT-TCT 196339 | || || || || ||||| || |||||||| ||||| ||||| || || |||| | Sbjct 739 ACGACATAGTGCTGGTGGGGGGCTCAACCCGCATTCCCAAGATCCA---GAAGCTTCTGC 683 Query 196340 AG--CTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTT 196397 || ||||||||| | ||| | ||||| | ||||| || ||||||||||| |||| Sbjct 682 AGGACTTCTTCAACGGCAGAGAGCTCAACAAGAGCATCAATCCAGATGAAGCAGTGGCTT 623 Query 196398 ATGGTGC 196404 |||| || Sbjct 622 ATGGAGC 616 >seq174935 Length=570 Score = 125 bits (138), Expect = 9e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||| | || || || || |||||||| ||||| ||| | Sbjct 149 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 90 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| |||||||| || || |||||||||||||| ||||||||| Sbjct 89 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAG 30 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCT 172010 || | || || ||||| || |||||||| Sbjct 29 CAGAGGCTCATCTTTGCCGGCAAACAGCT 1 >seq21484 Length=40370 Score = 102 bits (112), Expect = 1e-16 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 195698 ACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCG 195757 ||||| | | |||| || || || || || ||||| |||| ||| || || || ||||| Sbjct 39025 ACTGTTACAAATGCCGTGGTCACAGTCCCAGCTTATTTCAATGACTCCCAGCGTCAGGCT 38966 Query 195758 ACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAAC 195816 ||||| || || | | ||||| ||||| || ||| || ||||||| ||||| ||||| Sbjct 38965 ACAAAAGATGCCGGAACCATTGCTGGTCTCAA-TGTGCTCCGAATTATTAATGAGCCAAC 38907 Query 195817 AGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 || |||||||||||||| || ||||||| || Sbjct 38906 CGCAGCTGCAATTGCTTACGGCTTGGACAAAAA 38874 Score = 89.7 bits (98), Expect = 7e-13 Identities = 147/211 (70%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 196406 GCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTG 196462 || ||||| ||||| |||||||| || | |||| | | ||||| |||||||| || Sbjct 37928 GCTGTTCAAGCTGCAATTCTCTCCGGGG---ACAAATCTGAAAACGTGCAAGATCTGTTG 37872 Query 196463 CTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAA 196522 | || ||||| | || | ||||||||| | || ||||| ||||| || ||||| Sbjct 37871 TTGCTGGATGTGACTCCTCTCTCCCTGGGTATCGAGACAGCTGGTGGGGTCATGACAGTC 37812 Query 196523 ATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCC 196582 | || | | ||||| || || || || ||| || || ||| | || |||||| Sbjct 37811 CTGATCAAACGCAACACCACAATCCCTACCAAGCAGACTCAGACCTTCACTACATATTCC 37752 Query 196583 GATAATCAACCAGGTGTTCATATTCAAGTAT 196613 ||||| || |||||||| | ||||| |||| Sbjct 37751 GATAACCAGCCAGGTGTGCTGATTCAGGTAT 37721 >seq47242 Length=5371 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||||||||| || || ||||| |||||||| ||||| ||| | Sbjct 3511 ATGCAGATTTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCAAGT 3452 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 |||||||| || || |||| || || ||||| || |||||||| Sbjct 3451 GACACAATTGAAAATGTCAAGGCAAAAATTCAGGACAAGGAAGG 3408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656332310736960