Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21]
186,068 sequences; 1,520,334,138 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq29087 87.8 4e-12
seq177 86.0 1e-11
>seq29087
Length=41947
Score = 87.8 bits (96), Expect = 4e-12
Identities = 159/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| || ||||| | || | ||| | || | ||| || ||| || || ||
Sbjct 34850 ATCCCACCCCTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 34791
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| |||| || || || |||||||| | ||||| ||||||||
Sbjct 34790 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGA 34731
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| ||||| || || ||| || ||||| || | || | ||
Sbjct 34730 GGAATGCCTTCCTTATCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 34671
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || || || ||||| || ||||| || || || | ||| |||||||||||
Sbjct 34670 ACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 34618
>seq177
Length=121252
Score = 86.0 bits (94), Expect = 1e-11
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 49860 ATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATT 49919
|||| |||||| ||||| | ||||||||||| |||||||| || |||||||||||
Sbjct 54710 ATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTGAGCCAAAATATG 54651
Query 49920 GATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGC 49966
| ||||||| || ||| ||||| || || |||||| ||||| ||
Sbjct 54650 GCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGC 54604
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982133003371800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |