Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq29087 87.8 4e-12 seq177 86.0 1e-11 >seq29087 Length=41947 Score = 87.8 bits (96), Expect = 4e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | || | ||| | || | ||| || ||| || || || Sbjct 34850 ATCCCACCCCTCAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 34791 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || || |||||||| | ||||| |||||||| Sbjct 34790 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGA 34731 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || || ||| || ||||| || | || | || Sbjct 34730 GGAATGCCTTCCTTATCCTGGATCTTAGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 34671 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || ||||| || ||||| || || || | ||| ||||||||||| Sbjct 34670 ACCTCCAGGGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 34618 >seq177 Length=121252 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 49860 ATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATT 49919 |||| |||||| ||||| | ||||||||||| |||||||| || ||||||||||| Sbjct 54710 ATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTGAGCCAAAATATG 54651 Query 49920 GATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGC 49966 | ||||||| || ||| ||||| || || |||||| ||||| || Sbjct 54650 GCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGC 54604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982133003371800