Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq61725 179 5e-39 seq110900 174 2e-37 seq37141 174 2e-37 seq12208 152 6e-31 seq23788 147 3e-29 seq51488 104 3e-16 seq28341 102 1e-15 seq162283 98.7 1e-14 seq141878 91.5 2e-12 seq10737 86.0 8e-11 >seq61725 Length=12466 Score = 179 bits (198), Expect = 5e-39 Identities = 162/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | ||||||||||| |||||||||||||| | || Sbjct 2395 GCTTGGCCAGCTCGCCCGGCAGCAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAAGTGA 2454 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||||| | ||||||| |||| | Sbjct 2455 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCGGCGGCGATGCGCTCGAAGA 2514 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 2515 TGTCGTTGACNAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 2574 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 2575 GGACCTGCTTCAGCACCTTGTAGA 2598 Score = 100 bits (110), Expect = 3e-15 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| || ||||||||||| |||||||||||||| | | || Sbjct 9956 GCTTGGCCAGCTCTCCCGGCAGGAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAGGTGA 10015 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTC 1254457 | ||| ||||||||| |||||||||| ||| |||||||| | ||||||| || Sbjct 10016 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCGGCGGCGATGCGCTC 10070 >seq110900 Length=1553 Score = 174 bits (192), Expect = 2e-37 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| || ||||| ||||| |||||||||||||| | | || Sbjct 405 GCTTGGCCAGCTCTCCCGGCAGGAGGAGGCGGACGGCCGTCTGGATCTCGCGGGAGGTGA 464 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||||| ||||||| |||| | Sbjct 465 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCCTCGGCCGCGATGCGCTCGAAGA 524 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 525 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 584 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||||||||||||||||| Sbjct 585 GGACCTGCTTGAGCACCTTGTAGA 608 >seq37141 Length=11682 Score = 174 bits (192), Expect = 2e-37 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| || ||||| ||||| |||||||||||||| | | || Sbjct 672 GCTTGGCCAGCTCTCCCGGCAGGAGGAGGCGGACGGCCGTCTGGATCTCGCGGGAGGTGA 613 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||||| ||||||| |||| | Sbjct 612 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCCTCGGCCGCGATGCGCTCGAAGA 553 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 552 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 493 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||||||||||||||||| Sbjct 492 GGACCTGCTTGAGCACCTTGTAGA 469 >seq12208 Length=17076 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | ||||||||||| ||||||||||| |||| | || Sbjct 3664 GCTTGGCCAGCTCCCCCGGCAGCAGGAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 3605 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||| ||||| ||| ||||| ||||||| |||| | Sbjct 3604 TGGTCGAGCGCTTGTTGTAGTGGGCCAGGCGGGACGCCTCCCCCGCGATGCGCTCGAAGA 3545 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 3544 TGTCGTTCACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 3485 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 3484 GCACCTGCTTCAGCACCTTGTA 3463 >seq23788 Length=19405 Score = 147 bits (162), Expect = 3e-29 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| || ||||| ||||| |||||||||||||| | | || Sbjct 9657 GCTTGGCCAGCTCTCCCGGCAGGAGGAGGCGGACGGCCGTCTGGATCTCGCGGGAGGTGA 9598 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| |||||| | ||||| |||| | Sbjct 9597 TAGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCCTCCCCAGCTATGCGCTCGAAGA 9538 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||||||||| || ||||||| ||| | |||| ||||||||| ||| |||| Sbjct 9537 TATCGTTGACAAAGGAATTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCAGGGT 9478 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 9477 GGACCTGCTTCAGCACCTTGTAGA 9454 >seq51488 Length=4811 Score = 104 bits (114), Expect = 3e-16 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| |||||| ||||||||||| | |||||||| || ||| | |||||| Sbjct 4091 CGTCATCTCCTTCGACGGCTCCTACGTCAACTATCGCCACTTGGCCCTGCTCTGCGACAC 4150 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| ||| ||||| || ||||| ||||||| |||||| |||||||| Sbjct 4151 CATGACCTGTCGCGGGCACTTGATGGCCATCACGCGACACGGCGTCAACCGC 4202 >seq28341 Length=35211 Score = 102 bits (112), Expect = 1e-15 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 1254414 TTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACA 1254473 ||||| |||| ||||| ||| ||||| ||||||| |||| |||||||| || Sbjct 518 TTGTTGTAGTGGGCCAGGCGGGACGCCTCCCCCGCGATGCGCTCGAAGATGTCGTTCACG 459 Query 1254474 AACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTG 1254533 ||||||||||||| ||| | |||| |||||||| |||||||||||||||||| Sbjct 458 AACGAGTTCATGATGCTCATGGCCTTGGAAGAGATGCCGGTGTCGGGGTGCACCTGCTTC 399 Query 1254534 AGCACCTTGTA 1254544 ||||||||||| Sbjct 398 AGCACCTTGTA 388 >seq162283 Length=690 Score = 98.7 bits (108), Expect = 1e-14 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 |||||||||||||| |||||| || | | || |||||||||||||||||| | || Sbjct 624 ACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 565 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 ||||| || |||||||| |||||||||||||| || ||||| |||| | | | | Sbjct 564 CGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGAGACTCAATC 505 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 | ||| |||| | ||| | || ||| || | ||| | ||||||| Sbjct 504 ACGGCGTACCACAGCTGCTGGGCCTTCACCACTTTGCGCACCCGGCCCT 456 >seq141878 Length=967 Score = 91.5 bits (100), Expect = 2e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1627348 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCG 1627407 || || || |||||||| ||||| |||||||||||| ||||| | ||| || ||| Sbjct 816 AACTCCCCTGAGAGCACCCGGCGGGTGTAGATGTTGCTGGTGTAGGGCTCCACCGATTCG 875 Query 1627408 GTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAG 1627460 |||| ||||| ||||| | ||| | ||||||||||||| | ||||| ||||| Sbjct 876 TTGTTCCCCAGAATCTGAGCCGTGGAGGCCGTGGGCATGGGGGCCACCAGGAG 928 >seq10737 Length=39522 Score = 86.0 bits (94), Expect = 8e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||| |||||||| |||| || ||||| |||||||| || |||| | ||| ||||| Sbjct 18991 CATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGTGCCCTCTGCTCTTCCTT 18932 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 ||| |||||| || || ||||| | || | ||||| |||||| ||||||||||| Sbjct 18931 CCCGGTGTTCTTCTTCAGATCGAGGAATTCAAAGATGTCCATGTGCCAGGGCTCCAGGTA 18872 Query 1628568 GCAGGCAAAGGCGCC 1628582 | ||| ||||| || Sbjct 18871 GATGGCGAAGGCCCC 18857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6091869588563556