Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq174935 93.3 4e-14 seq29087 93.3 4e-14 seq141878 87.8 2e-12 >seq174935 Length=570 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| || || || || || || || || ||| | Sbjct 149 ATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 90 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| ||||| || ||||||||||| Sbjct 89 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCAG 30 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCT 24852 || | | ||||||||||| |||||||| Sbjct 29 CAGAGGCTCATCTTTGCCGGCAAACAGCT 1 >seq29087 Length=41947 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || || || || || || || || || || ||| Sbjct 34621 ATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAGT 34680 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || ||||| ||||| Sbjct 34681 GACACCATTGAGAATGTCAAGGCTAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAG 34740 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | | || || || ||| Sbjct 34741 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 34800 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || ||||| || || || || |||| Sbjct 34801 ATCCAGAAGGAGTCCACCCTCCATCTTG 34828 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || | || || || || || || || || || || ||| Sbjct 35076 GATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCCAG 35135 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| || || ||||| || ||||| ||||| Sbjct 35136 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCA 35195 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||| || || ||||||||||| ||| | | | | || || || || Sbjct 35196 GCAGAGGCTGATCTTCGCGGGCAAACAGCTGGAAGATGGCCGTACCCTCTCCGACTACAA 35255 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 ||| || ||||| || || || || |||| Sbjct 35256 CATCCAGAAGGAGTCTACCCTCCATCTTG 35284 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | || || || || || || || || || || ||| Sbjct 34848 GATGCAGATCTTYGTGAAGACCTTGACTGGRAAGACCATCACCCTGGAGGTGGAGCCCAG 34907 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| || || ||||| || ||||| ||||| Sbjct 34908 TGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCA 34967 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||| || || ||||||||||| ||| | | | | || || || || Sbjct 34968 GCAGAGGCTGATCTTCGCGGGCAAACAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 35027 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 ||| || ||||| || || || || |||| Sbjct 35028 CATCCAGAAGGAGTCCACCCTCCATCTTG 35056 >seq141878 Length=967 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 138540 GTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGT 138599 ||| |||||| ||||| | ||||| | |||||||||||| ||||||||||||||||||| Sbjct 842 GTAGATGTTGCTGGTGTAGGGCTCCACCGATTCGTTGTTCCCCAGAATCTGAGCCGTGGA 901 Query 138600 CGCGGTCGGCATGTACGCCACCA 138622 || || |||||| ||||||| Sbjct 902 GGCCGTGGGCATGGGGGCCACCA 924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448851205667040