Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq110900 233 3e-55 seq61725 233 3e-55 seq37141 233 3e-55 seq23788 201 2e-45 seq12208 197 2e-44 seq28341 107 3e-17 seq162283 104 4e-16 seq51488 102 1e-15 seq141878 87.8 3e-11 >seq110900 Length=1553 Score = 233 bits (258), Expect = 3e-55 Identities = 198/244 (81%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| || || ||| Sbjct 366 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCTCCCGGCA 425 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| ||||| |||||||||||||||| | ||| ||| ||||||||| | Sbjct 426 GGAGGAGGCGGACGGCCGTCTGGATCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 485 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| |||||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 486 GGGCCAGGCGGGAGGCCTCGGCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 545 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| ||||||||||||||||||| Sbjct 546 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTGAGCACCTTGT 605 Query 1485710 AAAC 1485713 | || Sbjct 606 AGAC 609 >seq61725 Length=12466 Score = 233 bits (258), Expect = 3e-55 Identities = 198/244 (81%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || |||||||||||| ||||||| ||||| ||| Sbjct 2356 TGTACTTGGTGACGGCCTTGGTGCCTTCGGAGACGGCGTGCTTGGCCAGCTCGCCCGGCA 2415 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||| |||||||||||||||| ||| ||| ||||||||| | Sbjct 2416 GCAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAAGTGATGGTGGAGCGCTTGTTGTAGT 2475 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 2476 GCGCCAGGCGGGAGGCCTCGGCGGCGATGCGCTCGAAGATGTCGTTGACNAAGGAGTTCA 2535 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 2536 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 2595 Query 1485710 AAAC 1485713 | || Sbjct 2596 AGAC 2599 Score = 152 bits (168), Expect = 8e-31 Identities = 126/154 (82%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||||||||| || || |||||||||||| ||||||| || || ||| Sbjct 9917 TGTATTTGGTGACGGCCTTGGTGCCTTCGGAGACGGCGTGCTTGGCCAGCTCTCCCGGCA 9976 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||||||||| |||||||||||||||| | ||| ||| ||||||||| | Sbjct 9977 GGAGGAGGCGCACGGCCGTCTGGATCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 10036 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTC 1485623 ||||||||||| |||||||| | ||||||| || Sbjct 10037 GCGCCAGGCGGGAGGCCTCGGCGGCGATGCGCTC 10070 >seq37141 Length=11682 Score = 233 bits (258), Expect = 3e-55 Identities = 198/244 (81%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| || || ||| Sbjct 711 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCTCCCGGCA 652 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| ||||| |||||||||||||||| | ||| ||| ||||||||| | Sbjct 651 GGAGGAGGCGGACGGCCGTCTGGATCTCGCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 592 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| |||||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 591 GGGCCAGGCGGGAGGCCTCGGCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 532 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||||||||| ||||||||||||||||||| Sbjct 531 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTGAGCACCTTGT 472 Query 1485710 AAAC 1485713 | || Sbjct 471 AGAC 468 >seq23788 Length=19405 Score = 201 bits (222), Expect = 2e-45 Identities = 191/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| |||||||||||| ||||||| || || ||| Sbjct 9696 TGTACTTGGTGACGGCCTTAGTGCCCTCCGAGACGGCGTGCTTGGCCAGCTCTCCCGGCA 9637 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| ||||| |||||||||||||||| | ||| ||| ||||||||| | Sbjct 9636 GGAGGAGGCGGACGGCCGTCTGGATCTCGCGGGAGGTGATAGTGGAGCGCTTGTTGTAGT 9577 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| |||||| | ||||| |||| || ||||||||||| || |||| Sbjct 9576 GGGCCAGGCGGGAGGCCTCCCCAGCTATGCGCTCGAAGATATCGTTGACAAAGGAATTCA 9517 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| |||||||||| Sbjct 9516 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCAGGGTGGACCTGCTTCAGCACCTTGT 9457 Query 1485710 AAAC 1485713 | || Sbjct 9456 AGAC 9453 >seq12208 Length=17076 Score = 197 bits (218), Expect = 2e-44 Identities = 190/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||||||||| || || || ||||||||| ||||||| || || ||| Sbjct 3703 TGTATTTGGTGACGGCCTTGGTGCCTTCCGACACGGCGTGCTTGGCCAGCTCCCCCGGCA 3644 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||||| ||||||||||| || | | ||| || ||||||||| | Sbjct 3643 GCAGGAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTCGAGCGCTTGTTGTAGT 3584 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||||| ||||||| |||| |||||||| || |||||||||| Sbjct 3583 GGGCCAGGCGGGACGCCTCCCCCGCGATGCGCTCGAAGATGTCGTTCACGAACGAGTTCA 3524 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 3523 TGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 3464 Query 1485710 AAAC 1485713 |||| Sbjct 3463 AAAC 3460 >seq28341 Length=35211 Score = 107 bits (118), Expect = 3e-17 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||||||| ||||| ||||||| |||| |||||||| || |||||||||||| Sbjct 506 GCCAGGCGGGACGCCTCCCCCGCGATGCGCTCGAAGATGTCGTTCACGAACGAGTTCATG 447 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| |||||||| |||||||||||||||||| |||||||||||| Sbjct 446 ATGCTCATGGCCTTGGAAGAGATGCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGTAA 387 Query 1485712 ACAAAGGACGAGTA 1485725 ||| || ||||| Sbjct 386 ACATAGATGGAGTA 373 >seq162283 Length=690 Score = 104 bits (114), Expect = 4e-16 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 |||| ||||||||| |||||| || | ||||||||||||||||||||||||| || Sbjct 624 ACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 565 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTG 2071688 ||||| || |||||||| ||||||||||||| |||||||| |||| Sbjct 564 CGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 515 >seq51488 Length=4811 Score = 102 bits (112), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 434126 CGTGATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 434185 ||| |||||||| |||||| ||||||||||| | |||||||| || ||| | |||||| Sbjct 4091 CGTCATCTCCTTCGACGGCTCCTACGTCAACTATCGCCACTTGGCCCTGCTCTGCGACAC 4150 Query 434186 CATGTGCTGTCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCG 434236 |||| ||||||||| || ||||| ||||||| |||||| ||||||| Sbjct 4151 CATGACCTGTCGCGGGCACTTGATGGCCATCACGCGACACGGCGTCAACCG 4201 >seq141878 Length=967 Score = 87.8 bits (96), Expect = 3e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 2069617 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCG 2069676 || || || |||||||| ||||| |||||||||||||| ||| | ||| || ||| Sbjct 816 AACTCCCCTGAGAGCACCCGGCGGGTGTAGATGTTGCTGGTGTAGGGCTCCACCGATTCG 875 Query 2069677 GTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAG 2069729 |||| ||||| ||||| | ||| | ||||||||||||| | ||||| || || Sbjct 876 TTGTTCCCCAGAATCTGAGCCGTGGAGGCCGTGGGCATGGGGGCCACCAGGAG 928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7896453498183852