Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq9360 147 4e-30 >seq9360 Length=62991 Score = 147 bits (162), Expect = 4e-30 Identities = 135/171 (79%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||| |||| ||||||||||| || ||||| |||||||| || || | || ||| | Sbjct 41503 GATAGCAGGAGCTTTATGGTGGTATTACATATCCAAAGGGATTGAGTATCTGGACACAAT 41444 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 || ||||| || || || || |||||||| | |||||||| || || ||||| ||||| Sbjct 41443 ATTCTTCATCCTAAGAAAGAAATTTAATCAAATCAGCTTTCTTCATGTCTATCACCATTT 41384 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 ||||||||||||||| | ||||| || || || ||| |||||||||| || Sbjct 41383 CACTATGTTTACTTTATGGTGGGTTGGCATAAAGTGGGTTGCAGGAGGACA 41333 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728 ||| || |||||| | || | || || ||||| |||| ||||| || |||||||| || Sbjct 37465 GGTTCAGTTCCATGTGACTCTTGGCCACACCGCCCTGTCTATTTATATTGATTGCCCCTT 37406 Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788 ||| ||||||| ||| ||| || || ||||| | | ||||| || | ||||||| Sbjct 37405 TCCTAAATGGATGCATTGGGGTGTCATTTTCTATGCCACCACTTTCATTATTCTGTTTGG 37346 Query 58789 TAACTTCTATTTTAGAACATACAAGA 58814 ||||||||| | | | |||||||||| Sbjct 37345 TAACTTCTACTATCGGACATACAAGA 37320 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600 |||||||| || ||||| | ||| |||| || |||||| ||||||| | |||||||| Sbjct 39551 GCATTTTTTGGAGCTCATATCAATGCTTTCATTCATGTTGTTATGTACATGTATTATGGA 39492 Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660 | || || ||||| | | ||| | ||||| | |||||||| || ||| | || ||| Sbjct 39491 CTAGCTGCCTGTGGCCCAAAGTTCCACAAGTACCTTTGGTGGAAACGATACTTGACCATA 39432 Query 58661 ATGCAATTGGTA 58672 |||||||| ||| Sbjct 39431 ATGCAATTAGTA 39420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901310001060480