Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq29087 131 2e-25 seq174935 129 6e-25 seq47242 84.2 2e-11 >seq29087 Length=41947 Score = 131 bits (144), Expect = 2e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| | ||| | | | || || |||| Sbjct 35052 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCCAGCT 34994 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||||||| | || |||| |||||| || ||||| ||||||||||| || ||||| Sbjct 34993 GTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCT 34934 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| ||||| |||||||||| || | ||||| ||| || || | Sbjct 34933 TGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTYCCAG 34874 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 34873 TCAAGGTCTTCACRAAGATCTGCAT 34849 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| | ||| | | | || || |||| Sbjct 34824 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCCAGCT 34766 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| |||||| || ||||| ||||||||||| || ||||| Sbjct 34765 GCTTGCCGGCAAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCT 34706 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| ||||| |||||||||| || | ||||| ||| || || | Sbjct 34705 TAGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAG 34646 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 34645 TCAAGGTCTTCACAAAGATCTGCAT 34621 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| ||| | || | | | || || |||| Sbjct 35280 ATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCA-TCTTCCAGCT 35222 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | ||||||||| | || |||| |||||| || ||||| ||||||||||| || ||||| Sbjct 35221 GTTTGCCCGCGAAGATCAGCCTCTGCTGATCAGGAGGAATGCCTTCCTTATCCTGGATCT 35162 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||||| ||||| |||||||||| || | ||||| ||| || || | Sbjct 35161 TGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCAG 35102 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 35101 TCAAGGTCTTCACAAAGATCTGCAT 35077 >seq174935 Length=570 Score = 129 bits (142), Expect = 6e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 133512 AGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG 133571 ||||| ||||| || | ||||||| |||||| |||||||| |||||||||||||| | Sbjct 1 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCCTGG 60 Query 133572 ATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||||| ||||| | ||||| |||||| |||||||||| || | ||||| ||| ||| Sbjct 61 ATCTTGGCCTTGACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTG 120 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||| || || || || |||||||| Sbjct 121 CCGGTCAAGGTCTTCACAAAGATCTGCAT 149 >seq47242 Length=5371 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 133557 CCTTCCTTGTCGGTGATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTC 133615 ||||||||||| ||| ||||| ||||| | |||| ||||| | |||||||| || Sbjct 3408 CCTTCCTTGTC-CTGAATTTTTGCCTTGACATTTTCAATTGTGTCACTTGGCTCCACCTC 3466 Query 133616 GACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| |||||||||||| || ||||| || ||||||||||| Sbjct 3467 AAGGGTGATGGTTTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT 3511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482296435732320