Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq18652 158 1e-33 seq5000 105 8e-18 seq26846 86.0 7e-12 >seq18652 Length=13112 Score = 158 bits (174), Expect = 1e-33 Identities = 571/884 (65%), Gaps = 21/884 (2%) Strand=Plus/Minus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||| |||||||| || || | ||||| ||| || ||||| | | || || Sbjct 3580 ATCAAACTTGTTGGCAAAGAAATGATGT---TTCCGTAACATCCAGCTCAAGTCTCCGAC 3524 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| || || || || || || ||||| || || |||| || || || | || || | Sbjct 3523 TCCAAAAACACATACAGAACGGACGTGAACTCCATTGCAAGGAGGGTAAGGAGCACCCTT 3464 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | ||||||||||| |||| |||||||| || |||| | | || | ||| ||||| Sbjct 3463 GGATACATCCCCCTCAAAGTAGTGCCACTTCACAAACCGGGCAACTGCATTCATATCGGA 3404 Query 162300 GGTGTCGTACTTGTACACTGACGGC-ACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 || || ||| ||||| ||| ||||| |||||||| | || | || ||| | | Sbjct 3403 AACATCATATTTGC-CACTGGCGGAGACGGCACCAGGAACCTCAGGGATTCGCTGAATTG 3345 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| | || ||| || ||||| || || || || | ||| || || || | | Sbjct 3344 TTGCCCATAAGTATTCATCAGGACTGTATGTGTCTTTAGCCCATTCTATAAAAGCAAGAA 3285 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 | ||| | || || || || | ||| | |||| ||| || || || | Sbjct 3284 TTTTGCTATTCTCTAATATATATTCCACAAACCTCCTACTAACAACAAAATAGGCACTTC 3225 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 |||| || | |||| || | ||| ||| ||| ||||||| || ||||| || | Sbjct 3224 CAGAGAAAATGGGTGTGTTGAGAGGTGGGTGCTGTTTGTCTATCCCTGTGTTTTTTATCT 3165 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG---T 162595 | || || | || |||| ||| ||||||| || |||| || | || || | Sbjct 3164 TGCCATCAATTACTTCGTGATGTTTCTTCCACCTCACC-TCTT--TGTTTGAAGGCATTT 3108 Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 ||| || |||| || || ||| | ||| |||| | ||| || ||| ||| Sbjct 3107 TTTCCGTTTCTAAGCTATTTTCACCGTTGAGGGCTTTCAATTTCTCCACTATTTCTTGAT 3048 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 ||||||| | || || || | ||||||||||| || | || ||||| | || | Sbjct 3047 TGGTCTTGATTGGGAAATCCATACCGCAGAGATTGATTAAGTACTTCCAGCTCACATTCC 2988 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 | || ||||||| | ||||| || || || || || || ||||| || || |||| Sbjct 2987 TCCTATAGAGATCCTTCATGCAGTTGAGGTCAGCTTGTACCCGGCTCCATGATGCATACA 2928 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835 | || || ||||| |||| | |||||||| | ||||| || | |||||| | | Sbjct 2927 CTACACTTTCCAATTGGCTGGCAATGAAGACATTATGAAAACATGATGCAATCCCCTTTA 2868 Query 162836 C----GGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGT-ATAGATT 162890 | | | || ||| | ||| | || | || || || | ||||| |||| || Sbjct 2867 CAGATGCCAAGAAAGACTCTGGGGAC----TTTTTGTCAACATGAATGCAGTAATAG-TT 2813 Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950 |||||| || || |||| ||||| | |||||| | ||| | || ||||| | |||| Sbjct 2812 CTGAGGAGCATATATGGTTCTCAGAAGTCTCTCAAGCATATTAATTTTATGATAAGCCAC 2753 Query 162951 GATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 || ||||| || ||||| || || || || || | || |||| Sbjct 2752 TATTGAATATGCAATGGGAAATTCTGCTTCTTCTTGGCTAAGAG 2709 >seq5000 Length=25908 Score = 105 bits (116), Expect = 8e-18 Identities = 175/251 (70%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 162723 CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCT 162782 ||| |||| | ||||||||||| || ||||| | ||| || || || || ||||| Sbjct 5580 CAGGTCCTTCATGCAGTTCAGATCAGCTTGGACCCTCGACCAAGAGGCATAGACCACGCT 5521 Query 162783 CTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAG 162842 |||| | ||| || | ||| ||||||||||| || || | || || ||||| Sbjct 5520 CTCCTGCTTAGAAGCCAGAAAAACATTGTCGAAGCAGGAGGCAATGGCCTGAACGGCTTT 5461 Query 162843 T--GAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCG 162900 | || || ||||| | ||| || || ||||| || || |||| |||||||| || Sbjct 5460 TTGGAAAAGTTCGGG--AGATTTGCTGTCCACGTGGACACAATATACGTTCTGAGGAGCA 5403 Query 162901 TAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATAC 162960 || ||| |||| ||| || || |||||||| ||||| | || | ||| || ||||| Sbjct 5402 AAGGTGGATCTCAATAACCTTTCAAACATCTCGATCTTTTCATGGATCACCATGGAATAA 5343 Query 162961 GCTATGGGGAA 162971 || || ||||| Sbjct 5342 GCAATAGGGAA 5332 >seq26846 Length=13707 Score = 86.0 bits (94), Expect = 7e-12 Identities = 144/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 176951 TTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTC 177010 |||| |||||||| | |||| |||||||||||||| || |||||| ||||| || Sbjct 7425 TTCT-TAGGGGACTCAAAATCGTCCACGTGAATGAAAGACTCAGCCGGGATGTAATCCTC 7483 Query 177011 GTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCGGTA 177070 ||| || ||||| | | || || || | ||| || | || |||| || | ||| Sbjct 7484 GTAGTTTTCTCTGGGAGGACCCAGAACCACGGGCACAGATCCAGCCAGAAATGCAAAGTA 7543 Query 177071 GAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACA 177130 ||||| ||||||||||| || | | ||| || ||||| || ||||| || || || Sbjct 7544 AAGTTTCTCGGTAATATAATCTTTAAAGATGGAATTTTCAAAGGCCAGATAAAACTTGCA 7603 Query 177131 GGAAGATAGTAGCGGGATGAAGTCATC 177157 || || || || |||||||| || Sbjct 7604 AGACGAAAGGGTGGGCATGAAGTCTTC 7630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577086653932800