Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq135879 102 3e-18 seq134121 102 3e-18 seq73036 98.7 3e-17 seq49517 98.7 3e-17 seq44988 98.7 3e-17 seq121943 95.1 4e-16 seq16269 89.7 2e-14 >seq135879 Length=1059 Score = 102 bits (112), Expect = 3e-18 Identities = 61/64 (95%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 135 AAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCGG 76 Query 2833 GCTT 2836 |||| Sbjct 75 GCTT 72 >seq134121 Length=1089 Score = 102 bits (112), Expect = 3e-18 Identities = 61/64 (95%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| || || Sbjct 850 AAGTAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCTGG 791 Query 2833 GCTT 2836 |||| Sbjct 790 GCTT 787 >seq73036 Length=2985 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2069 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2010 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2009 CCGGGTTTCGGC 1998 >seq49517 Length=5067 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1891 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1832 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1831 CCGGGTTTCGGC 1820 >seq44988 Length=9065 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 8743 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 8684 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 8683 CCGGGTTTCGGC 8672 >seq121943 Length=1311 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||||||||||||||||||| |||||| | | Sbjct 585 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCATGGTTCGATC 644 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 645 CCGGGTTTCGGC 656 >seq16269 Length=69741 Score = 89.7 bits (98), Expect = 2e-14 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 2770 CTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCC 2829 ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| | || Sbjct 51186 CTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTTGATCC 51127 Query 2830 CGGGCTT 2836 ||| || Sbjct 51126 TGGGTTT 51120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15817344181860