Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq110900 197 2e-44 seq61725 197 2e-44 seq37141 197 2e-44 seq23788 161 1e-33 seq12208 161 1e-33 seq162283 105 1e-16 seq141878 91.5 2e-12 seq28341 86.0 9e-11 >seq110900 Length=1553 Score = 197 bits (218), Expect = 2e-44 Identities = 183/231 (79%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 |||||||||||||||||||||| |||||| |||| |||| ||| |||| ||| Sbjct 608 TCTACAAGGTGCTCAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 555 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| |||||||| | Sbjct 554 TGAGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGCCGAGGCCTCCC 495 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | | |||||||||||||| ||||| | Sbjct 494 GCCTGGCCCACTACAACAAGCGCTCCACCATCACCTCCCGCGAGATCCAGACGGCCGTCC 435 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| || ||| || || ||||||| ||||||||||||||||||||||| Sbjct 434 GCCTCCTCCTGCCGGGAGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 384 >seq61725 Length=12466 Score = 197 bits (218), Expect = 2e-44 Identities = 183/231 (79%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| ||| |||| ||| Sbjct 2598 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 2545 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| | |||||||| | Sbjct 2544 TGAGCATCATGAACTCCTTNGTCAACGACATCTTCGAGCGCATCGCCGCCGAGGCCTCCC 2485 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| ||| ||| | |||||||||||||| ||||||| Sbjct 2484 GCCTGGCGCACTACAACAAGCGCTCCACCATCACTTCCCGCGAGATCCAGACGGCCGTGC 2425 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||||| ||||||| ||||||||||||||| ||||||| Sbjct 2424 GCCTCCTGCTGCCGGGCGAGCTGGCCAAGCACGCCGTCTCCGAAGGCACCA 2374 Score = 132 bits (146), Expect = 7e-25 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 725007 GACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGC 725066 || ||||||| | |||||||| |||||||||| || |||||||||| ||| ||| | Sbjct 10070 GAGCGCATCGCCGCCGAGGCCTCCCGCCTGGCGCACTACAACAAGCGCTCCACCATCACC 10011 Query 725067 ACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCC 725126 | |||||||||||||| ||||||||||| || ||| || || ||||||| ||||||| Sbjct 10010 TCCCGCGAGATCCAGACGGCCGTGCGCCTCCTCCTGCCGGGAGAGCTGGCCAAGCACGCC 9951 Query 725127 GTCTCCGAGGGCACCA 725142 |||||||| ||||||| Sbjct 9950 GTCTCCGAAGGCACCA 9935 >seq37141 Length=11682 Score = 197 bits (218), Expect = 2e-44 Identities = 183/231 (79%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 |||||||||||||||||||||| |||||| |||| |||| ||| |||| ||| Sbjct 469 TCTACAAGGTGCTCAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 522 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| |||||||| | Sbjct 523 TGAGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGCCGAGGCCTCCC 582 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | | |||||||||||||| ||||| | Sbjct 583 GCCTGGCCCACTACAACAAGCGCTCCACCATCACCTCCCGCGAGATCCAGACGGCCGTCC 642 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| || ||| || || ||||||| ||||||||||||||||||||||| Sbjct 643 GCCTCCTCCTGCCGGGAGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 693 >seq23788 Length=19405 Score = 161 bits (178), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| ||||| |||| |||| ||| |||| ||| Sbjct 9454 TCTACAAGGTGCTGAAGCAGGTCCACCCTGACACCGG-----CATC-TCCTCCAAGGCCA 9507 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||| || ||||||||||| || |||| ||||| | |||||| | Sbjct 9508 TGAGCATCATGAATTCCTTTGTCAACGATATCTTCGAGCGCATAGCTGGGGAGGCCTCCC 9567 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| ||| ||| | | |||||||||||||| ||||| | Sbjct 9568 GCCTGGCCCACTACAACAAGCGCTCCACTATCACCTCCCGCGAGATCCAGACGGCCGTCC 9627 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||| || ||| || || ||||||| |||||||||||| |||||||| Sbjct 9628 GCCTCCTCCTGCCGGGAGAGCTGGCCAAGCACGCCGTCTCGGAGGGCAC 9676 >seq12208 Length=17076 Score = 161 bits (178), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 3463 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 3516 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| || |||||||| |||| ||||||| ||||| ||| Sbjct 3517 AGCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCGGGGGAGGCGTCCCGC 3576 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| || ||| | |||| ||||||||||| ||||||||| Sbjct 3577 CTGGCCCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGC 3636 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || || ||||||| ||||||||| || || ||||||| Sbjct 3637 CTCCTGCTGCCGGGGGAGCTGGCCAAGCACGCCGTGTCGGAAGGCACCA 3685 >seq162283 Length=690 Score = 105 bits (116), Expect = 1e-16 Identities = 88/105 (84%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 262124 GAGACCGGCACGCCCTACATGGTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAG 262183 ||||| || |||||||||||| ||||||||||| || ||||| || |||||||||||| Sbjct 521 GAGACGGGGACGCCCTACATGCTCTACAAGGACTCCTGCAACCGGAAGAGCAACCAGCAG 580 Query 262184 AACCTGGGCACCACGACAGAG-GCCAACCTGTGCACCGAGATCGT 262227 ||||||||||||| | || | |||||| |||||||||||||| Sbjct 581 AACCTGGGCACCATCA-AGTGCAGCAACCTCTGCACCGAGATCGT 624 >seq141878 Length=967 Score = 91.5 bits (100), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 262936 CTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTC 262995 || ||||| | ||||||||||||| | ||| | ||||| ||||| |||| ||| || | Sbjct 925 CTGGTGGCCCCCATGCCCACGGCCTCCACGGCTCAGATTCTGGGGAACAACGAATCGGTG 866 Query 262996 GAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTT 263045 ||| | ||| |||||||||||||| ||||| |||||||| || || || Sbjct 865 GAGCCCTACACCAGCAACATCTACACCCGCCGGGTGCTCTCAGGGGAGTT 816 >seq28341 Length=35211 Score = 86.0 bits (94), Expect = 9e-11 Identities = 102/137 (74%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| || |||| ||||| Sbjct 388 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCTTCCAAGGCCATG 441 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| || |||||||| |||| ||||||| ||||| ||| Sbjct 442 AGCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCGGGGGAGGCGTCCCGC 501 Query 725034 CTGGCGCGCTCCAACAA 725050 ||||| | || |||||| Sbjct 502 CTGGCCCACTACAACAA 518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7159864599407016