Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21]
186,068 sequences; 1,520,334,138 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq7215 138 2e-27
seq177 116 5e-21
seq49828 87.8 2e-12
>seq7215
Length=34700
Score = 138 bits (152), Expect = 2e-27
Identities = 105/124 (85%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||||||||| | || |||||||| || ||||||||||| ||||| || || |
Sbjct 16588 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCT 16647
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||||||||| | |||||||| |||||||||||||| ||||| ||||| |||||||
Sbjct 16648 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 16707
Query 39759 CAAC 39762
| ||
Sbjct 16708 CTAC 16711
Score = 87.8 bits (96), Expect = 2e-12
Identities = 103/139 (74%), Gaps = 3/139 (2%)
Strand=Plus/Plus
Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326
|||| || || |||| |||| || ||||||| | | |||||| || |||||
Sbjct 14976 TTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGCAGGACTTGACATCACACCCATCC 15035
Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386
|||| ||||| || || || || || || || |||||||||||||||| || ||||| |
Sbjct 15036 TTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTCT 15095
Query 39387 CCATGAAATCAAACGGATT 39405
|||| || ||||| |||||
Sbjct 15096 CCATAAAGTCAAATGGATT 15114
Score = 87.8 bits (96), Expect = 2e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
||| |||| ||| ||||| || | | |||||||||||||||||| ||||| || || ||
Sbjct 18650 ATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 18709
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982
||||| || || || ||||| | |||||| || | |||||| |||
Sbjct 18710 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 18755
Score = 87.8 bits (96), Expect = 2e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
||| |||| ||| ||||| || | | |||||||||||||||||| ||||| || || ||
Sbjct 22598 ATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 22657
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982
||||| || || || ||||| | |||||| || | |||||| |||
Sbjct 22658 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 22703
>seq177
Length=121252
Score = 116 bits (128), Expect = 5e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
|||||||| ||||| | ||| || || || || || || ||||||| || | ||| |||
Sbjct 54722 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 54663
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
|||||||||||||| ||||||| ||||| |||||||| ||||| || || ||||| |||
Sbjct 54662 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGCA 54603
Query 39761 ACAAGTCTCTCTCC 39774
|| | ||| || ||
Sbjct 54602 ACCACTCTTTCACC 54589
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/136 (74%), Gaps = 3/136 (2%)
Strand=Plus/Minus
Query 39273 AAAAGTCAACATCTAAAGAAAAA---TGATTATCTTCTTGTGACATAACTCCCATTTTTT 39329
|||||||| ||||||||| ||| | ||||| | ||| ||||||||| | | | ||
Sbjct 60704 AAAAGTCAGCATCTAAAGTAAATACCTTATTATTTGCTTCGGACATAACTGCAAAATGTT 60645
Query 39330 GGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCA 39389
| ||||| ||| | |||| || ||||| ||||| ||||||| || || |||||||
Sbjct 60644 GATATTCTGAAACTCTCCTCTCAAAGAAATTGGTTTTTCCTTCCAGGGAAATGTTTTCCA 60585
Query 39390 TGAAATCAAACGGATT 39405
|||| ||||| || ||
Sbjct 60584 TGAAGTCAAAAGGGTT 60569
>seq49828
Length=5021
Score = 87.8 bits (96), Expect = 2e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 40115 ACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGA 40174
|| |||||||||||||| || ||||||||||| || |||||||| | ||| || ||| |
Sbjct 777 ACCTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATGG 718
Query 40175 TATTGTATTGGAAAAATAACAAA 40197
||||| || |||||||| |||||
Sbjct 717 TATTGAATAGGAAAAATGACAAA 695
Score = 87.8 bits (96), Expect = 2e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
||| |||| ||| ||||| || | | |||||||||||||||||| ||||| || || ||
Sbjct 4639 ATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 4580
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982
||||| || || || ||||| | |||||| || | |||||| |||
Sbjct 4579 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 4534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 685311153167520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |