Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7215 138 2e-27 seq177 116 5e-21 seq49828 87.8 2e-12 >seq7215 Length=34700 Score = 138 bits (152), Expect = 2e-27 Identities = 105/124 (85%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||||||||| | || |||||||| || ||||||||||| ||||| || || | Sbjct 16588 CCTCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCT 16647 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| | |||||||| |||||||||||||| ||||| ||||| ||||||| Sbjct 16648 TTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATG 16707 Query 39759 CAAC 39762 | || Sbjct 16708 CTAC 16711 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326 |||| || || |||| |||| || ||||||| | | |||||| || ||||| Sbjct 14976 TTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGCAGGACTTGACATCACACCCATCC 15035 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 |||| ||||| || || || || || || || |||||||||||||||| || ||||| | Sbjct 15036 TTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTCT 15095 Query 39387 CCATGAAATCAAACGGATT 39405 |||| || ||||| ||||| Sbjct 15096 CCATAAAGTCAAATGGATT 15114 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 ||| |||| ||| ||||| || | | |||||||||||||||||| ||||| || || || Sbjct 18650 ATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 18709 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || || ||||| | |||||| || | |||||| ||| Sbjct 18710 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 18755 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 ||| |||| ||| ||||| || | | |||||||||||||||||| ||||| || || || Sbjct 22598 ATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 22657 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || || ||||| | |||||| || | |||||| ||| Sbjct 22658 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 22703 >seq177 Length=121252 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| ||||| | ||| || || || || || || ||||||| || | ||| ||| Sbjct 54722 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCTTG 54663 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 |||||||||||||| ||||||| ||||| |||||||| ||||| || || ||||| ||| Sbjct 54662 AGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACGCA 54603 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 54602 ACCACTCTTTCACC 54589 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 39273 AAAAGTCAACATCTAAAGAAAAA---TGATTATCTTCTTGTGACATAACTCCCATTTTTT 39329 |||||||| ||||||||| ||| | ||||| | ||| ||||||||| | | | || Sbjct 60704 AAAAGTCAGCATCTAAAGTAAATACCTTATTATTTGCTTCGGACATAACTGCAAAATGTT 60645 Query 39330 GGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCA 39389 | ||||| ||| | |||| || ||||| ||||| ||||||| || || ||||||| Sbjct 60644 GATATTCTGAAACTCTCCTCTCAAAGAAATTGGTTTTTCCTTCCAGGGAAATGTTTTCCA 60585 Query 39390 TGAAATCAAACGGATT 39405 |||| ||||| || || Sbjct 60584 TGAAGTCAAAAGGGTT 60569 >seq49828 Length=5021 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 40115 ACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGA 40174 || |||||||||||||| || ||||||||||| || |||||||| | ||| || ||| | Sbjct 777 ACCTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATGG 718 Query 40175 TATTGTATTGGAAAAATAACAAA 40197 ||||| || |||||||| ||||| Sbjct 717 TATTGAATAGGAAAAATGACAAA 695 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 ||| |||| ||| ||||| || | | |||||||||||||||||| ||||| || || || Sbjct 4639 ATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 4580 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || || ||||| | |||||| || | |||||| ||| Sbjct 4579 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 4534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685311153167520