Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7215 107 2e-18 seq49828 105 5e-18 seq1118 100 2e-16 seq177 100 2e-16 >seq7215 Length=34700 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| | || || ||||| | || ||||| || |||||||| || || ||||| Sbjct 16723 GGTGAACGTGTAGTAGCATTTGCTGCAGTTGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 16664 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||||||| |||||||||||||| |||||||||| | || ||||| |||||| | Sbjct 16663 TCAATATTTTGGCTAAAGAAACGAGGTCTGATGCCTGGACTTACTTTTTCTAATGAGCTG 16604 Query 44243 ATAAGTCGTGATGA 44256 || ||| | ||||| Sbjct 16603 ATTAGTAGAGATGA 16590 Score = 100 bits (110), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 9/141 (6%) Strand=Plus/Minus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || ||||| |||||||| ||||| || ||||||||||||| ||||| |||||||| Sbjct 15114 AATCCATTTGACTTTATGGAGAATATCTCTCTGGAAGGCAAAACTAACTTCTTTGAAAAG 15055 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAACAAGT------GACAATAAATTT 44608 || || ||||||||||| | ||||| | |||| ||||| || ||| ||| Sbjct 15054 CGTGTAGGAGAATATCAAAGGATGGGTG---TGATGTCAAGTCCTGCAGATAATTCATTC 14998 Query 44609 ACTACGGATGAAGATTTCTAA 44629 ||| ||||| |||||||||| Sbjct 14997 ACTTTGGATGCAGATTTCTAA 14977 Score = 100 bits (110), Expect = 2e-16 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| |||||||| |||||||| |||||||||||||| |||||| |||| Sbjct 26541 TTTGTCATTTTTCCTATTCAATACCATGACATCTGGCAAATGTACAAGAAAGCAGAGGCT 26482 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 ||||| |||||||| ||||| || Sbjct 26481 TCATTCTGGACAGCTGAAGAGGT 26459 >seq49828 Length=5021 Score = 105 bits (116), Expect = 5e-18 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| |||||||| |||||||| |||||||||||||| |||||| ||||| Sbjct 695 TTTGTCATTTTTCCTATTCAATACCATGACATCTGGCAAATGTACAAGAAAGCAGAGGCG 754 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 ||||| |||||||| ||||| || Sbjct 755 TCATTCTGGACAGCTGAAGAGGT 777 >seq1118 Length=41628 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 ||||| |||| || || ||| | || ||||||||| ||| || || ||||| || Sbjct 14323 ATGGCTCTGCCTCCATGCCATGCTCTCTGCCAGTTTTACATTTTAAACGGCGAACTCTCT 14382 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 ||||| | ||||| | || || ||||||||||| || || ||||| |||||||| ||| Sbjct 14383 TGTCAGCTATATCAGCGTTCTGGAGACATGGGACTGGGCGTACCGTTCAACATAGCTAGT 14442 Query 41169 TATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||| | || || || | |||||||| || ||||| Sbjct 14443 TATTCACTTCTTACTTCAATGATTGCCCATGTTAC 14477 >seq177 Length=121252 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| || | |||||||| || ||||| ||||| ||||| || | ||||||||| Sbjct 52703 CAAGAAGTGCAGATCCCAGAAGCTCGCTGTTTCTATGGCTTTCAGATATCAATAGAAAAT 52762 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||||| || ||||||||| | | ||||| || |||||||||||| Sbjct 52763 GTTCATTCTGAGATGTACAGTTTGTTAATAGACACCTACATCAAAGAT 52810 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||| || | || |||||||| | ||| ||||| || ||||| || || | ||||| Sbjct 54589 GGTGAAAGAGTGGTTGCGTTTGCTGCTGTCGAAGGAATCTTCTTCTCTGGTGCTTTTGCA 54648 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||||||||||| | ||||| |||| || ||||| || | || || || ||||| | Sbjct 54649 GCCATATTTTGGCTCAAGAAGAGAGGGTTAATGCCAGGCCTTACTTTCTCCAATGAACTT 54708 Query 44243 ATAAGTCGTGATGAAG 44258 || || | ||||||| Sbjct 54709 ATTAGCAGAGATGAAG 54724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396554687538340