Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq162283 102 9e-17 seq10737 82.4 8e-11 >seq162283 Length=690 Score = 102 bits (112), Expect = 9e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 ||||||| |||| || ||| | ||| || ||||| | || ||||||||||||| Sbjct 646 CTCGTCCTGGCTGGAGTACTCCACGATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCC 587 Query 79140 GATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCC 79199 | ||||| ||||||||||||| ||| |||| |||||||||| |||||| |||||||| Sbjct 586 CAGGTTCTGCTGGTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGCGTCCC 527 Query 79200 GGTCTC 79205 ||||| Sbjct 526 CGTCTC 521 >seq10737 Length=39522 Score = 82.4 bits (90), Expect = 8e-11 Identities = 108/146 (74%), Gaps = 8/146 (5%) Strand=Plus/Minus Query 79370 TCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCG-GCAA 79428 |||| ||| || ||||||||||||||||||||| || || ||||||||| || || Sbjct 19004 TCTCCACCCGCTTCATGAAGAGGTCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGTGC-- 18947 Query 79429 CGCATCTCCTCGTC--GCCCTG-GTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCG 79485 | ||| ||| || ||| | |||| ||| ||||| || || | |||||| | Sbjct 18946 --CCTCTGCTCTTCCTTCCCGGTGTTCTTCTTCAGATCGAGGAATTCAAAGATGTCCATG 18889 Query 79486 TGCCACGGCTCCAGATAGATGGCGAA 79511 ||||| |||||||| ||||||||||| Sbjct 18888 TGCCAGGGCTCCAGGTAGATGGCGAA 18863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547249013593920