Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2518 91.5 2e-13 seq177 89.7 6e-13 seq27533 86.0 7e-12 seq141878 84.2 2e-11 seq49368 82.4 8e-11 >seq2518 Length=64716 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||||||||||||||||||||| ||| | ||||| ||||| Sbjct 50713 GTGAAGATGTAACGAGGACTTGCAGCATCCTTGCCACCATGAAGCCTAGTACCAAATTGA 50772 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | | | | || || || |||||||| | ||||||||||||| Sbjct 50773 CCAATAGGCTGTAGCAAGCTGATATTATTACTTCCAACAAAGTTCTTAGCCAAGTTGACA 50832 Query 117425 ATCGT 117429 || || Sbjct 50833 ATTGT 50837 >seq177 Length=121252 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74770 CTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCT 74829 ||||||||||||| || | |||||| || || | |||||| ||||| | || | ||||| Sbjct 54724 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 54665 Query 74830 TCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGG 74889 | | |||||| ||||| || | |||| ||||||||| ||||||||| ||||| | Sbjct 54664 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACG 54605 Query 74890 CGAC 74893 | || Sbjct 54604 CAAC 54601 >seq27533 Length=29545 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||| |||| | ||| || || || || ||||| ||||| ||||||||||| Sbjct 13956 GTAAAGATATATCTAGGGCTTGCAGCGTCTTTTCCACCATGCAGCCTAGTTCCAAACTGA 13897 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | || | ||| ||||||||| |||||| ||||| ||||||||||| | | Sbjct 13896 CCAATGGGTTGAAGTAAGTTCAGGTTGTTGCTGCCCACAAAATTTTGAGCCAAATTAATA 13837 Query 152149 ATCGT 152153 || || Sbjct 13836 ATAGT 13832 >seq141878 Length=967 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 ||| || ||||| || ||||| || || || ||||||||||| |||| |||||||| | Sbjct 929 CCTCCTGGTGGCCCCCATGCCCACGGCCTCCACGGCTCAGATTCTGGGGAACAACGAATC 870 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTT 55605 | | ||||| ||||| | |||||||||| |||||| || |||| ||||| Sbjct 869 GGTGGAGCCCTACACCAGCAACATCTACACCCGCCGGGTGCTCTCAGGGGAGTT 816 >seq49368 Length=10861 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||||||||||||||||||||| ||| | ||||| || || Sbjct 6520 GTGAAGATGTAACGAGGACTTGCAGCATCCTTGCCACCATGAAGCCTTGTACCAAACTGA 6579 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| |||| | | | | || || || |||||||| ||||||||||||||| Sbjct 6580 CCAACAGGCTGTAGCAAACTGACATTATTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 6639 Query 117425 ATCGT 117429 || || Sbjct 6640 ATAGT 6644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545943257666400