Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq174935 113 5e-20 seq47242 95.1 1e-14 seq49368 87.8 2e-12 seq2518 84.2 2e-11 seq682 84.2 2e-11 >seq174935 Length=570 Score = 113 bits (124), Expect = 5e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| | ||||||||||| || || || ||||| ||| | | Sbjct 150 AATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 91 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| | ||||| || || ||||||||||| || |||||||| || || Sbjct 90 CGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCA 31 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACT 27554 |||| | || || ||||| || || || || Sbjct 30 GCAGAGGCTCATCTTTGCCGGCAAACAGCT 1 >seq47242 Length=5371 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || |||||||| || || || |||||||| ||| || | Sbjct 3512 AATGCAGATTTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCAAG 3453 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 ||| | |||| |||| | ||||| ||||||||||||||||| || Sbjct 3452 TGACACAATTGAAAATGTCAAGGCAAAAATTCAGGACAAGGAAGG 3408 >seq49368 Length=10861 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||||||| | |||||||||||||| || ||||| | | || || |||| Sbjct 6644 ACTATTGTCAACTTGGCTCAGAACTTTGTTGGAAGTAATAATGTCAGTTTGCTACAGCCT 6585 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || |||| ||||||||||||||||| || | ||||||||| Sbjct 6584 GTTGGTCAGTTTGGTACAAGGCTTCATGGTGGCAAGGATGCTGCAAGTCCTCGTTACATC 6525 Query 32245 TTCACC 32250 |||||| Sbjct 6524 TTCACC 6519 >seq2518 Length=64716 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||||||| | ||| |||||||||| || ||||| | | ||| || |||| Sbjct 50837 ACAATTGTCAACTTGGCTAAGAACTTTGTTGGAAGTAATAATATCAGCTTGCTACAGCCT 50778 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| || ||||| || |||| ||||||||||||||||| || | ||||||||| Sbjct 50777 ATTGGTCAATTTGGTACTAGGCTTCATGGTGGCAAGGATGCTGCAAGTCCTCGTTACATC 50718 Query 32245 TTCACC 32250 |||||| Sbjct 50717 TTCACC 50712 >seq682 Length=47070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| ||||| |||||| ||||||||||||| || ||| | ||||||| ||| Sbjct 38462 GGGATTCCTCCTGACCAACAGCGTTTAATTTTTGCTGGCAAACAATTGGAGGATGGACGT 38521 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAAT 27598 || || | || ||||| ||||||||| || Sbjct 38522 ACTCTGTCTGATTATAACATCCAAAAGGTAT 38552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568983943556160