Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21]
186,068 sequences; 1,520,334,138 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq174935 113 5e-20
seq47242 95.1 1e-14
seq49368 87.8 2e-12
seq2518 84.2 2e-11
seq682 84.2 2e-11
>seq174935
Length=570
Score = 113 bits (124), Expect = 5e-20
Identities = 115/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| |||||||| ||||| | ||||||||||| || || || ||||| ||| | |
Sbjct 150 AATGCAGATCTTTGTGAAGACCTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 91
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||||| ||| | ||||| || || ||||||||||| || |||||||| || ||
Sbjct 90 CGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGATCA 31
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACT 27554
|||| | || || ||||| || || || ||
Sbjct 30 GCAGAGGCTCATCTTTGCCGGCAAACAGCT 1
>seq47242
Length=5371
Score = 95.1 bits (104), Expect = 1e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || ||||| || || || |||||||| || || || |||||||| ||| || |
Sbjct 3512 AATGCAGATTTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTTGAGGTGGAGCCAAG 3453
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
||| | |||| |||| | ||||| ||||||||||||||||| ||
Sbjct 3452 TGACACAATTGAAAATGTCAAGGCAAAAATTCAGGACAAGGAAGG 3408
>seq49368
Length=10861
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184
|| ||||||||| | |||||||||||||| || ||||| | | || || ||||
Sbjct 6644 ACTATTGTCAACTTGGCTCAGAACTTTGTTGGAAGTAATAATGTCAGTTTGCTACAGCCT 6585
Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244
||| |||||||| || |||| ||||||||||||||||| || | |||||||||
Sbjct 6584 GTTGGTCAGTTTGGTACAAGGCTTCATGGTGGCAAGGATGCTGCAAGTCCTCGTTACATC 6525
Query 32245 TTCACC 32250
||||||
Sbjct 6524 TTCACC 6519
>seq2518
Length=64716
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184
|| ||||||||| | ||| |||||||||| || ||||| | | ||| || ||||
Sbjct 50837 ACAATTGTCAACTTGGCTAAGAACTTTGTTGGAAGTAATAATATCAGCTTGCTACAGCCT 50778
Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244
||| || ||||| || |||| ||||||||||||||||| || | |||||||||
Sbjct 50777 ATTGGTCAATTTGGTACTAGGCTTCATGGTGGCAAGGATGCTGCAAGTCCTCGTTACATC 50718
Query 32245 TTCACC 32250
||||||
Sbjct 50717 TTCACC 50712
>seq682
Length=47070
Score = 84.2 bits (92), Expect = 2e-11
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567
|| |||||||| ||||| |||||| ||||||||||||| || ||| | ||||||| |||
Sbjct 38462 GGGATTCCTCCTGACCAACAGCGTTTAATTTTTGCTGGCAAACAATTGGAGGATGGACGT 38521
Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAAT 27598
|| || | || ||||| ||||||||| ||
Sbjct 38522 ACTCTGTCTGATTATAACATCCAAAAGGTAT 38552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 568983943556160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |