Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1118 89.7 4e-13 seq2885 87.8 1e-12 >seq1118 Length=41628 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 |||| || ||||||| ||||| ||||| ||||||||||| || || | || || | || Sbjct 12947 TCATATCTTTGTACTCGGCTCCAAAATGTCTCCACTGGAAGCCATAAATAGGACCTAAGT 12888 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 |||| || || || || ||| ||||| || || | | ||||| ||||| | Sbjct 12887 CTCCTTCCTCTCTAGAGAAAAATCCCTGTTTGTCTAAGAATTGCCGAGAACCATTGGCAT 12828 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||| ||||| || ||||| |||| |||||||| | ||||| || || Sbjct 12827 CCCAAATCTTAACTCCCTTAGCAGAAAGCTCTTTTGCATTTGTAGAACC 12779 >seq2885 Length=50683 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 110413 CTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAA 110472 || || ||||| || || |||| | | | ||| | ||| || || ||||||||||||||| Sbjct 45134 CTAAGTACTACATTAATTCTGTTTTTTAAAGGACGATTTTTCTCAGGGATGGAGAACCAA 45193 Query 110473 GTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||| ||||||||||| ||||| || ||||| ||| Sbjct 45194 GTCTTCCTACCCATTATGACCACATTTTGCTTTCCT 45229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405389008382256