Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1118 98.7 9e-16 >seq1118 Length=41628 Score = 98.7 bits (108), Expect = 9e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 |||||| || ||||| || || || ||||| | |||||||| || ||| | || Sbjct 14311 GATCTCTCTGCAATGGCTCTGCCTCCATGCCATGCTCTCTGCCAGTTTTACATTTTAAAC 14370 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || || || || || ||||| ||||| || || ||||||||||| | || || |||||| Sbjct 14371 GGCGAACTCTCTTGTCAGCTATATCAGCGTTCTGGAGACATGGGACTGGGCGTACCGTTC 14430 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 ||||| |||||||| | || || || | ||||| || ||||| Sbjct 14431 AACATAGCTAGTTATTCACTTCTTACTTCAATGATTGCCCATGT 14474 Score = 98.7 bits (108), Expect = 9e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 ||||| || ||||| | || || || | |||||||| ||||||||||| || || | Sbjct 14474 ACATGGGCAATCATTGAAGTAAGAAGTGAATAACTAGCTATGTTGAACGGTACGCCCAGT 14415 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||||||||| || || ||||| ||||| || || || || || || | ||| || Sbjct 14414 CCCATGTCTCCAGAACGCTGATATAGCTGACAAGAGAGTTCGCCGTTTAAAATGTAAAAC 14355 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||||| | ||||| || || || ||||| || |||||| Sbjct 14354 TGGCAGAGAGCATGGCATGGAGGCAGAGCCATTGCAGAGAGATC 14311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447219808896960