Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq29087 89.7 3e-13 >seq29087 Length=41947 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||| | || || || || ||||| || || || || || Sbjct 34618 AAAATGCAGATCTTTGTGAAGACCTTGACTGGGAAGACCATCACCCTGGAGGTGGAGCCC 34677 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || | | || || ||||| | || || || Sbjct 34678 AGTGACACCATTGAGAATGTCAAGGCTAAGA-TCCAGGATAAGGAAGGCATTCCTCCTGA 34736 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||| | | || ||||||||||| || |||||||| | ||||| | ||| || Sbjct 34737 TCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTA 34796 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 34797 CAACATCCAGAAGGAGTCCAC 34817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337243094362544