Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq7215 113 4e-20 seq177 111 1e-19 seq49828 84.2 2e-11 >seq7215 Length=34700 Score = 113 bits (124), Expect = 4e-20 Identities = 108/137 (79%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 |||| || |||| | ||||| |||||||| || |||||||| || | ||| ||||| | Sbjct 16578 ACAAATCATACCT-CATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAG 16636 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 ||||| || || ||||||||||| | ||||| || ||||||||||| || ||||| || Sbjct 16637 ACCTCGTTTCTTTAGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAAC 16696 Query 4679 GGCGGCAAACGCTACTA 4695 || ||||| ||||||| Sbjct 16697 TGCAGCAAATGCTACTA 16713 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 ||||||||| || || |||| ||||||||||| ||||| || || || || |||||||| Sbjct 18656 AATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTG 18715 Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || | |||||||| ||||| ||||| Sbjct 18716 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 18754 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 ||||||||| || || |||| ||||||||||| ||||| || || || || |||||||| Sbjct 22604 AATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTG 22663 Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || | |||||||| ||||| ||||| Sbjct 22664 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 22702 >seq177 Length=121252 Score = 111 bits (122), Expect = 1e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| ||||||||||| ||||| || || || || | || |||||||| |||||||| | Sbjct 54724 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 54665 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | ||||||||||| || ||||| | ||||| ||||| || ||||| || || ||||||| Sbjct 54664 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACG 54605 Query 4690 CTAC 4693 | || Sbjct 54604 CAAC 54601 >seq49828 Length=5021 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 4817 AATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTG 4876 ||||||||| || || |||| ||||||||||| ||||| || || || || |||||||| Sbjct 4633 AATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGCAATCTG 4574 Query 4877 AAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || | |||||||| ||||| ||||| Sbjct 4573 GAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTC 4535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426081178020644