Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq7215 107 3e-18 seq177 102 1e-16 seq49828 96.9 5e-15 >seq7215 Length=34700 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||||||||| | || |||||||| || || |||||||| || || || || || Sbjct 16590 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCTTT 16649 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||||||||| | || ||||| ||||||||||| || ||||| || || || ||||| Sbjct 16650 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 16709 Query 46774 AC 46775 || Sbjct 16710 AC 16711 Score = 100 bits (110), Expect = 4e-16 Identities = 106/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 46339 |||| || || |||| |||| || ||||||| | | |||||| || ||||| Sbjct 14976 TTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGCAGGACTTGACATCACACCCATCC 15035 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 |||| ||||| |||||||| || || || || |||||||||||||||| || ||||| | Sbjct 15036 TTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATATTCT 15095 Query 46400 CCATAAAATCAAACGGATT 46418 ||||||| ||||| ||||| Sbjct 15096 CCATAAAGTCAAATGGATT 15114 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187 || |||||||||||||||||||| ||||||||||| || ||||| | ||| || ||| | Sbjct 26459 ACCTCTTCAGCTGTCCAGAATGAAGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATGG 26518 Query 47188 TATTGGATCGGAAAAATAACAAA 47210 ||||| || |||||||| ||||| Sbjct 26519 TATTGAATAGGAAAAATGACAAA 26541 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 ||| |||| ||| ||||| || | | |||||||||||||||||||||||| || || || Sbjct 18650 ATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 18709 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||| || || || ||||| | |||||| || | ||||| ||| Sbjct 18710 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 18755 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 ||| |||| ||| ||||| || | | |||||||||||||||||||||||| || || || Sbjct 22598 ATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 22657 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||| || || || ||||| | |||||| || | ||||| ||| Sbjct 22658 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 22703 >seq177 Length=121252 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| ||||| | ||| || || || || || || ||||||| || | ||| | Sbjct 54724 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 54665 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 ||||||||||||| || || |||| ||||| ||||| || ||||| ||||| || || | Sbjct 54664 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACG 54605 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 54604 CAACCACTCTTTCACC 54589 >seq49828 Length=5021 Score = 96.9 bits (106), Expect = 5e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 47128 ACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187 || |||||||||||||||||||||||||||||||| || ||||| | ||| || ||| | Sbjct 777 ACCTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTCTTGTACATTTGCCAGATGTCATGG 718 Query 47188 TATTGGATCGGAAAAATAACAAA 47210 ||||| || |||||||| ||||| Sbjct 717 TATTGAATAGGAAAAATGACAAA 695 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 ||| |||| ||| ||||| || | | |||||||||||||||||||||||| || || || Sbjct 4639 ATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTTCTCCATGGC 4580 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||| || || || ||||| | |||||| || | ||||| ||| Sbjct 4579 AATCTGGAAGCCATAGAAACAGCGTGCTTCTGTGACTTGTACTTCT 4534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711276221525760