Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crotalus_20horridus_20[genbank_20GCA_5F001625485.1_202016-04-21] 186,068 sequences; 1,520,334,138 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq7215 111 2e-19 seq49828 93.3 4e-14 seq177 89.7 5e-13 >seq7215 Length=34700 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| |||||||||| ||||||||||| || | ||| ||||| | |||||||| || Sbjct 16590 TCATCTCTACTAATCAGCTCATTAGAAAAAGTAAGTCCAGGCATCAGACCTCGTTTCTTT 16649 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||||||||||| ||||| || || |||||||| || || ||||| || ||||| || Sbjct 16650 AGCCAAAATATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCAACTGCAGCAAATGCT 16709 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 16710 ACTACACGT 16718 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 23158 TTTTAAAAATCTTCATCTAAAGTGAAT---TTCACTGCTTTATCACTATTCATAACACCC 23214 ||||| |||||| |||| ||||||||| || |||| | ||| ||| |||||| Sbjct 14975 TTTTAGAAATCTGCATCCAAAGTGAATGAATTATCTGC---AGGACTTGACATCACACCC 15031 Query 23215 ATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATA 23274 || |||||||||| || ||||| |||| || || || || || || || | || ||| Sbjct 15032 ATCCTTTGATATTCTCCTACACGCTTTTCAAAGAAGTTAGTTTTGCCTTCCAGAGAGATA 15091 Query 23275 TTTTCCATAAAATCAAATGGATT 23297 || |||||||| ||||||||||| Sbjct 15092 TTCTCCATAAAGTCAAATGGATT 15114 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 23763 TTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATT 23822 ||||| | ||| | ||||| |||||||| ||||||||||||||||| |||||||| || Sbjct 18641 TTCTTTAGAATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 18700 Query 23823 TTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 || || |||||||| || ||||| ||||| | ||||| Sbjct 18701 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTC 18739 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 23763 TTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATT 23822 ||||| | ||| | ||||| |||||||| ||||||||||||||||| |||||||| || Sbjct 22589 TTCTTTAGAATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 22648 Query 23823 TTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 || || |||||||| || ||||| ||||| | ||||| Sbjct 22649 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTC 22687 >seq49828 Length=5021 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 23763 TTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATT 23822 ||||| | ||| | ||||| |||||||| ||||||||||||||||| |||||||| || Sbjct 4648 TTCTTTAGAATCCTTAATATAAGTATCAATAAGTAAACTATACATTTCTGAATGAATGTT 4589 Query 23823 TTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 || || |||||||| || ||||| ||||| | ||||| Sbjct 4588 CTCCATGGCAATCTGGAAGCCATAGAAACAGCGTGCTTC 4550 >seq177 Length=121252 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/158 (73%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || ||||| | |||||| || || || | ||||||||||| |||| || | Sbjct 54724 CTTCATCTCTGCTAATAAGTTCATTGGAGAAAGTAAGGCCTGGCATTAACCCTCTCTTCT 54665 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||||||||| || ||||| | || || ||||| || || || ||||| ||||| | Sbjct 54664 TGAGCCAAAATATGGCTGCAAAAGCACCAGAGAAGAAGATTCCTTCGACAGCAGCAAACG 54605 Query 23651 CCACAAGACGTGTACCAAATGTTGCATTATAATCAGAA 23688 | || | | | ||| |||| || | |||||||| Sbjct 54604 CAACCACTCTTTCACC---TGTTTCAATGAAATCAGAA 54570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520275097135200